Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00257
         (798 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47984| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0)                       31   1.1  
SB_37524| Best HMM Match : p450 (HMM E-Value=0)                        30   2.5  
SB_51594| Best HMM Match : p450 (HMM E-Value=3.5e-35)                  29   4.4  
SB_37363| Best HMM Match : TPR_2 (HMM E-Value=0)                       29   4.4  
SB_29141| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_4909| Best HMM Match : TPR_2 (HMM E-Value=0)                        29   5.8  
SB_5761| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.8  

>SB_47984| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 20/25 (80%), Positives = 24/25 (96%)
 Frame = +1

Query: 493 NKKSCLKLEKLDTDLKNYKTNSIKK 567
           +KK+ LKLEKLDTDLKNYK+NSIK+
Sbjct: 15  SKKAALKLEKLDTDLKNYKSNSIKE 39


>SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0)
          Length = 1161

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 561 QESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYCTSGKHLV 686
           Q++++   ++LG  Y   GD   A KCY +  D C     +V
Sbjct: 449 QQNVQPNLEELGLLYAKSGDFNEASKCYEKLLDLCLKNGDVV 490


>SB_37524| Best HMM Match : p450 (HMM E-Value=0)
          Length = 362

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/52 (23%), Positives = 29/52 (55%)
 Frame = +3

Query: 336 LKMAISYVMTTYNVNLYHTLHKKLSEAVASAGLPDIAGSQDIPVLDTIWVES 491
           L  A+ Y++  +N ++   LHK++ + +     P ++  +++PVL+    E+
Sbjct: 177 LGWAVIYLL--HNPDVQERLHKEIDDVIGRDAFPQLSKRKELPVLEAFTAET 226


>SB_51594| Best HMM Match : p450 (HMM E-Value=3.5e-35)
          Length = 1208

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +3

Query: 336  LKMAISYVMTTYNVNLYHTLHKKLSEAVASAGLPDIAGSQDIPVLDTIWVES 491
            L  AI+Y++  +N  +   LHK++ + +     P ++  ++IPVL+    E+
Sbjct: 1077 LSWAIAYLL--HNPGVQARLHKEIDQVIGRDVSPKLSQRKNIPVLEAFTAET 1126


>SB_37363| Best HMM Match : TPR_2 (HMM E-Value=0)
          Length = 936

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 564 ESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYCTSGKHLV 686
           E+++    +LG  Y   GD   A KCY +  D C     +V
Sbjct: 571 ENVQPNLGELGVLYTKSGDFNEANKCYEKQLDLCLKNGDVV 611


>SB_29141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1331

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 564 ESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYCTSGKHLV 686
           E+++    +LG  Y   GD   A KCY +  D C     +V
Sbjct: 622 ENVQPNLGELGVLYTKSGDFNEANKCYEKQLDLCLKNGDVV 662


>SB_4909| Best HMM Match : TPR_2 (HMM E-Value=0)
          Length = 1307

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 564 ESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYC 665
           E+++    +LG  Y   GD   A KCY +  D C
Sbjct: 614 ENVQPNLAELGGLYTKSGDFNEANKCYEKLLDSC 647


>SB_5761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 887

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
 Frame = +3

Query: 564 ESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYC--------TSGKHLVMMCLNVVKVSV 719
           E+++    + G  Y   GD   A KCY +  D C         +  HL+M+C   + V+ 
Sbjct: 224 ENVQPNLAERGGLYTKSGDFNEANKCYEKLLDSCLKNGDVVGQADTHLMMVCCTCLNVTT 283

Query: 720 YLQNWA 737
            ++ W+
Sbjct: 284 -IRLWS 288


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,074,166
Number of Sequences: 59808
Number of extensions: 461431
Number of successful extensions: 1161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)