Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00257
         (798 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical ...    81   7e-16
U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical ...    29   5.1  
AL032660-2|CAA21751.1|  690|Caenorhabditis elegans Hypothetical ...    28   6.7  
Z30423-2|CAA83004.1|  468|Caenorhabditis elegans Hypothetical pr...    28   8.9  
U50300-2|AAC48102.1|  335|Caenorhabditis elegans Serpentine rece...    28   8.9  
L16621-6|AAA28229.1|   67|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical
           protein Y59A8A.1 protein.
          Length = 601

 Score = 81.4 bits (192), Expect = 7e-16
 Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
 Frame = +3

Query: 249 NIAASYTGFAKLYRLMFVADHCPSLRLEALKMAISYVMT-TYNVNLYHTLHKKLSEAVAS 425
           ++A SY   A   R  F+A HCP LR +A    I+Y+   T ++  Y     +L   +A 
Sbjct: 88  SLACSYDSNAFFLRARFIARHCPILRADAYISLINYLKEHTTDITHYVAFFNELESELAR 147

Query: 426 AGLPDIAGSQDIPVLDTIWVESKQKKLPK-TGKARY*FEKL*NKFNQESIRRGHDDLGDH 602
               +   +  IP+ D  W+E         T + +  +++  ++  +ES RR  +DL  H
Sbjct: 148 KEFKNRQLNFQIPLRDQKWIEENGATWQSTTDQLQAEYKRHKDEGVKESTRRAMEDLFQH 207

Query: 603 YLDCGDLTSALKCYSRA-RDYCTSGKHLVMMCLNVVKVSVYLQNW 734
           Y+  G +  A++ YSR  RDYCT  KH + M +N ++V++   +W
Sbjct: 208 YMMAGKIDEAIRLYSRGIRDYCTQLKHSINMWINWMEVAICANDW 252


>U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical protein
            T19A5.1 protein.
          Length = 1280

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 187  LGEYQPALVQLCSFRTLLEGFRPFLMKIREIYC 89
            +G+YQ AL    S  +L   F+P   KIR IYC
Sbjct: 1240 IGDYQRALNFYYSTLSLQANFQPAKDKIRTIYC 1272


>AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical
           protein Y56A3A.4 protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 127 NPPIMFEMNTAEPMQVDIPPEDNEN-NETE 213
           NP I   ++T  PMQ  IPP+ ++N NE +
Sbjct: 21  NPQIAAALSTNSPMQQGIPPQGHQNPNEQQ 50


>AL032660-2|CAA21751.1|  690|Caenorhabditis elegans Hypothetical
           protein Y70G10A.3 protein.
          Length = 690

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -2

Query: 194 LSSGGISTCIGSAVFISNIIGGF*AFFNENTRNLLSTMKTNSS 66
           LS+     CI   +F S II GF AF  +    LLST  T +S
Sbjct: 329 LSNPTFLVCIFVGIFESIIINGFAAFMPKILETLLSTNPTLAS 371


>Z30423-2|CAA83004.1|  468|Caenorhabditis elegans Hypothetical
           protein T20G5.2 protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 161 NQCRLIFPQKIMKTMRRNATSLKTPPWIWKH 253
           NQ  L+F  KI+  +  N T  +   W+WKH
Sbjct: 307 NQEVLVFLNKIVGEIGFNYTEEQLKEWVWKH 337


>U50300-2|AAC48102.1|  335|Caenorhabditis elegans Serpentine
           receptor, class x protein2 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 267 YMTQLCFQIQGGVFNDVAFRLIVFIIFWGNINLHWFSCV 151
           Y  Q CF      F+ + FR  VF I  G+  L WF C+
Sbjct: 230 YAMQFCFISMFYTFSWITFR--VFPIAIGDRGLEWFICI 266


>L16621-6|AAA28229.1|   67|Caenorhabditis elegans Hypothetical
           protein ZK688.4 protein.
          Length = 67

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 21/60 (35%), Positives = 27/60 (45%)
 Frame = -2

Query: 221 T*HSVSLFSLSSGGISTCIGSAVFISNIIGGF*AFFNENTRNLLSTMKTNSSENRNFTTL 42
           T HSVS F + S  I   + SAV ++        FF E  R   ST       N+N TT+
Sbjct: 9   TVHSVSNFYIFSSTI--LLTSAVILAIFFFFGDGFFREKYRREFSTNSKEKDGNKNLTTV 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,581,365
Number of Sequences: 27780
Number of extensions: 370789
Number of successful extensions: 983
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)