Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00257
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    27   0.27 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    25   0.62 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    24   1.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   7.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   7.6  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 26.6 bits (56), Expect = 0.27
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 273 NQYMTQLCFQIQGGVFNDVAFRLIVFIIFWGNIN 172
           N+YM  L  ++Q  + ND  F  + F I   N+N
Sbjct: 542 NEYMMALSMKLQKFINNDYNFNEVNFRILGANVN 575


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 285 KVLQNQYMTQLCFQIQGGVFNDVAFRLIVFIIFWGNIN 172
           ++ +N+YM  L  ++Q  V ND  F  + F I   N+N
Sbjct: 372 RIHKNEYMLALSNRMQKIVNNDFNFDEVNFRILGANVN 409


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 547 YNFSNQYLAFPVLGSFF 497
           YN  + Y+ F  +GSFF
Sbjct: 192 YNMDSSYVIFSAMGSFF 208


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 321 LRLEALKMAISYVMTTYNVNL 383
           LRL+A +  ++Y   TY +N+
Sbjct: 487 LRLKARRACMNYERFTYKINI 507


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 321 LRLEALKMAISYVMTTYNVNL 383
           LRL+A +  ++Y   TY +N+
Sbjct: 487 LRLKARRACMNYERFTYKINI 507


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,282
Number of Sequences: 438
Number of extensions: 4708
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)