Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00257
         (798 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61140.1 68416.m06842 COP9 signalosome complex subunit 1 / CS...   103   1e-22
At1g30590.1 68414.m03742 RNA polymerase I specific transcription...    29   2.7  

>At3g61140.1 68416.m06842 COP9 signalosome complex subunit 1 / CSN
           complex subunit 1 (CSN1) / COP11 protein (COP11) / FUSCA
           protein (FUS6) FUSCA6, COP11, CSN1; identical to FUS6
           GI:432446, SP:P45432 from [Arabidopsis thaliana];
           contains Pfam profile PF01399: PCI domain; identical to
           cDNA CSN complex subunit 1 (CSN1) GI:18056652
          Length = 441

 Score =  103 bits (248), Expect = 1e-22
 Identities = 61/180 (33%), Positives = 96/180 (53%), Gaps = 4/180 (2%)
 Frame = +3

Query: 255 AASYTGFAKLYRLMFVADHCP---SLRLEALKMAISYVMTTYNVNLYHTLHKKLSEAVAS 425
           AA Y G  K+ RL+F+A+HC    +L+ +AL+MA   +    N  L+  +  K+   +  
Sbjct: 40  AALYKGRTKIMRLLFIANHCGGNHALQFDALRMAYDEIKKGENTQLFREVVNKIGNRLGE 99

Query: 426 AGLPDIAGSQDIPVLDTIWVESKQKKLPKTGKARY*FEKL*NKFNQESIRRGHDDLGDHY 605
               D+A  + +         ++QKK+    K             +ESIR G++D GD Y
Sbjct: 100 KYGMDLAWCEAVDR------RAEQKKV----KLENELSSYRTNLIKESIRMGYNDFGDFY 149

Query: 606 LDCGDLTSALKCYSRARDYCTSGKHLVMMCLNVVKVSVYLQNWAHVLNYVSKVKR-PQTL 782
             CG L  A K Y R RDYCT+ KH++ MC+N + VS+ +  + HV +YV+K ++ P+TL
Sbjct: 150 YACGMLGDAFKNYIRTRDYCTTTKHIIHMCMNAILVSIEMGQFTHVTSYVNKAEQNPETL 209


>At1g30590.1 68414.m03742 RNA polymerase I specific transcription
           initiation factor RRN3 family protein weak similarity to
           RNA polymerase I transcription factor RRN3 [Homo
           sapiens] GI:7670100; contains Pfam profile PF05327: RNA
           polymerase I specific transcription initiation factor
           RRN3
          Length = 604

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -2

Query: 404 FFMQCVIQIYVICGHDIGYGHFQSFQSQ*R---TVVCYKHEPIKFCKTSI*RSYVSRSKV 234
           F+  C   +YV+C           FQSQ R   +++ +K  P+  C  S+   ++ ++K 
Sbjct: 412 FYSGCQAILYVLCFRMRSIVEIPRFQSQFRSLESILSHKLNPLLVCLPSVVSEFLKQAKA 471

Query: 233 G 231
           G
Sbjct: 472 G 472


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,464,263
Number of Sequences: 28952
Number of extensions: 340685
Number of successful extensions: 823
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)