Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00255
(462 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 97 2e-21
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 94 8e-21
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 29 0.35
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 28 0.60
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 1.8
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 26 3.2
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 25 4.3
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 25 5.6
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 25 5.6
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 25 5.6
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 5.6
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 5.6
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 25 5.6
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 25 7.4
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 25 7.4
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 7.4
SPBC1604.10 |srb7|med21|mediator complex subunit Srb7 |Schizosac... 24 9.8
SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces pom... 24 9.8
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 96.7 bits (230), Expect = 2e-21
Identities = 41/62 (66%), Positives = 51/62 (82%)
Frame = +2
Query: 68 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 247
I+KKRTK F RHQSDR+ ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +P
Sbjct: 6 IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
Query: 248 NG 253
NG
Sbjct: 66 NG 67
Score = 70.1 bits (164), Expect = 2e-13
Identities = 32/63 (50%), Positives = 47/63 (74%)
Frame = +1
Query: 244 PKWIRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 423
P ++ LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++VTNA A++R
Sbjct: 65 PNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVR 124
Query: 424 SQE 432
SQE
Sbjct: 125 SQE 127
>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 94.3 bits (224), Expect = 8e-21
Identities = 41/62 (66%), Positives = 50/62 (80%)
Frame = +2
Query: 68 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 247
IVKKRTK F RHQSD + ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +P
Sbjct: 6 IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
Query: 248 NG 253
NG
Sbjct: 66 NG 67
Score = 70.5 bits (165), Expect = 1e-13
Identities = 32/63 (50%), Positives = 47/63 (74%)
Frame = +1
Query: 244 PKWIRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 423
P ++ LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++VTNA A++R
Sbjct: 65 PNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVR 124
Query: 424 SQE 432
SQE
Sbjct: 125 SQE 127
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 29.1 bits (62), Expect = 0.35
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -1
Query: 456 IIQLYLFVLLGPEASGRIRYSDAELLGSFHDQLPLLRRDTVSDL 325
+++L L + G E + RY +L FH L ++ RD + D+
Sbjct: 484 LLKLQLIIKWGGEFTHSARYQSKDLGEQFHKDLYIMNRDCLKDV 527
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 28.3 bits (60), Expect = 0.60
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = -3
Query: 241 HMTGLLVGTVTDVGHQVLTLESPADSVVNTSRF-TPIPLKFV--IAIRLMPDKSLRP 80
H+ G+ T + G + +T DS + + TP+P+KFV IA+ MP +LRP
Sbjct: 395 HLGGINSITFLENGKRFVTTSD--DSSMRFWEYGTPVPIKFVADIAMHSMPRVALRP 449
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 435 VLLGPEASGRIRYSDAELLGSFHDQLPLLRRDTVSDLCAVL 313
VL + R+ +SD + + +F DQ +RR + LC +L
Sbjct: 139 VLKNSKQISRLIHSDVQNISNFFDQNFGIRRSNIYQLCLLL 179
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.8 bits (54), Expect = 3.2
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 250 WIRKVLVHNVKEL-EILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRS 426
W+ +VL + E+ EI +Q A + G +SKK ++ E ++LSI T ++
Sbjct: 579 WMARVLGDDKAEISEISKVQTSIKSATMIKGSTSKKVAVVSENNRRLSIFDTRSSEFSEK 638
Query: 427 QE 432
+E
Sbjct: 639 EE 640
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 25.4 bits (53), Expect = 4.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 226 EDPSYAPKWIRKVLVHNVKELEILMMQN 309
+DP +PKW+ H +K+L L++QN
Sbjct: 937 DDPGLSPKWL-----HAIKKLLPLLLQN 959
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.0 bits (52), Expect = 5.6
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +2
Query: 59 RPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRH 238
R T VK+R K I+ S+ + KP G R R+ K Y +P G + +
Sbjct: 540 RETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERK--KVNYALP--GLRTKLRRNF 595
Query: 239 MLPNGSVRS 265
LP+ V++
Sbjct: 596 DLPSDHVKA 604
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 25.0 bits (52), Expect = 5.6
Identities = 23/76 (30%), Positives = 32/76 (42%)
Frame = +2
Query: 119 DKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGSVRS*FTMLKSWKS* 298
D L N + P+ +D+ + + I Y SNK T LPN FT L
Sbjct: 419 DNLIDNLKYPQSLDDHLSSK-------KPISYFSNKLTHQTLPNV-----FTQLSELSK- 465
Query: 299 *CKTGSTAQRSLTVSL 346
C S A++ LT +L
Sbjct: 466 -CHEASLAEKQLTYNL 480
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 5.6
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +1
Query: 28 NIQDGYKTCLQADNRQKEDEEIYQASIGS 114
NI DGY + D K+D + + +G+
Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.0 bits (52), Expect = 5.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 92 FIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 217
F H D YD+L NW++ ++ +RFK NI G
Sbjct: 822 FCVHTRDVYDELVPNWKETYQMEITNVKRFKLIIYQRNIHTG 863
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 5.6
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +3
Query: 300 DAKQEVLRRDRSRCLFEEAEADRGKSPAAQHQSNECGRSPPVPG 431
D K+ R+ +E A K P + S+ C R+PP G
Sbjct: 125 DKKRRAAERENKNSSVKETAAPI-KQPKNANSSSTCTRTPPTSG 167
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 5.6
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +1
Query: 28 NIQDGYKTCLQADNRQKEDEEIYQASIGS 114
NI DGY + D K+D + + +G+
Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 24.6 bits (51), Expect = 7.4
Identities = 10/64 (15%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 253 IRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKL--IVERAQQLSIRVTNAAARLRS 426
+R+ +HN++ ++ L+ Q ++C + V ++ ++ A ++ + + ++A R
Sbjct: 597 LREWFLHNIESIDQLIAQAHEFCIDSGSRVQELPLEVLDVIMEANEVILAIQSSALAYRR 656
Query: 427 QENE 438
+ +
Sbjct: 657 ESQK 660
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 24.6 bits (51), Expect = 7.4
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 261 GPSSQC*RAGNLDDAKQEVLRRDRSRC-LFEEAEADRGKSPAAQHQSNECGRSPPVP 428
GP Q R + ++AK++ ++ +R ++EA++ K P+ + + GR+PP P
Sbjct: 645 GPIRQ--RYLDAEEAKRQKVQAEREAAKAATKSEAEKQK-PSGKFEEGTGGRAPPPP 698
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 24.6 bits (51), Expect = 7.4
Identities = 8/29 (27%), Positives = 14/29 (48%)
Frame = +1
Query: 319 CAEIAHGVSSKKRKLIVERAQQLSIRVTN 405
C + HGV + K ++ER + +N
Sbjct: 135 CQPVRHGVVDSETKFVIERKDSFTFLASN 163
>SPBC1604.10 |srb7|med21|mediator complex subunit Srb7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 24.2 bits (50), Expect = 9.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 399 YSDAELLGSFHDQLPLLRRDTVSD 328
YS L S HD +PL ++ VSD
Sbjct: 20 YSSIHYLSSHHDFVPLPGQEKVSD 43
>SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 238
Score = 24.2 bits (50), Expect = 9.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -3
Query: 94 KSLRPLFDDCRPVNRSYSHLVC 29
+S++ + DDC P N +L C
Sbjct: 17 ESVKSVLDDCTPPNVQLEYLTC 38
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,448
Number of Sequences: 5004
Number of extensions: 36267
Number of successful extensions: 112
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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