Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00255
(462 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 103 5e-23
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 100 1e-21
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 100 1e-21
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 96 1e-20
08_02_1238 + 25486263-25487574,25488210-25489117 28 3.2
10_05_0101 - 9167383-9167679,9167883-9167961,9168161-9168326,916... 27 7.3
08_02_1245 - 25557201-25558199 27 7.3
05_05_0377 - 24498664-24500215,24500306-24500643 27 7.3
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194... 27 7.3
10_07_0016 + 11826066-11826773 27 9.7
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137... 27 9.7
02_05_0250 + 27153048-27154453,27154546-27154885 27 9.7
02_01_0123 + 896128-896429,896578-896608,896903-896995,897096-89... 27 9.7
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 103 bits (248), Expect = 5e-23
Identities = 48/75 (64%), Positives = 59/75 (78%)
Frame = +2
Query: 26 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPN 205
+TY+M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPN
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPN 377
Query: 206 IGYGSNKKTRHMLPN 250
IGYGS+KKTRH LPN
Sbjct: 378 IGYGSDKKTRHYLPN 392
Score = 36.3 bits (80), Expect = 0.012
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +1
Query: 238 YAPKWIRKVLVHNVKELEILMMQNR 312
Y P +K +VHNV ELE+LMM NR
Sbjct: 389 YLPNKFKKFVVHNVSELELLMMHNR 413
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 99.5 bits (237), Expect = 1e-21
Identities = 47/71 (66%), Positives = 56/71 (78%)
Frame = +2
Query: 38 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 217
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 218 SNKKTRHMLPN 250
S+KKTRH LPN
Sbjct: 60 SDKKTRHYLPN 70
Score = 77.0 bits (181), Expect = 7e-15
Identities = 36/55 (65%), Positives = 42/55 (76%)
Frame = +1
Query: 238 YAPKWIRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 402
Y P +K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I ++
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVIS 121
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 99.5 bits (237), Expect = 1e-21
Identities = 47/71 (66%), Positives = 56/71 (78%)
Frame = +2
Query: 38 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 217
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 218 SNKKTRHMLPN 250
S+KKTRH LPN
Sbjct: 60 SDKKTRHYLPN 70
Score = 95.9 bits (228), Expect = 1e-20
Identities = 47/67 (70%), Positives = 52/67 (77%)
Frame = +1
Query: 238 YAPKWIRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 417
Y P +K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I VTN AR
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLAR 126
Query: 418 LRSQENE 438
LRSQE+E
Sbjct: 127 LRSQEDE 133
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 95.9 bits (228), Expect = 1e-20
Identities = 47/67 (70%), Positives = 52/67 (77%)
Frame = +1
Query: 238 YAPKWIRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 417
Y P +K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I VTN AR
Sbjct: 134 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLAR 193
Query: 418 LRSQENE 438
LRSQE+E
Sbjct: 194 LRSQEDE 200
Score = 73.3 bits (172), Expect = 9e-14
Identities = 30/39 (76%), Positives = 36/39 (92%)
Frame = +2
Query: 134 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPN 250
+WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH LPN
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPN 137
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +2
Query: 38 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 130
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>08_02_1238 + 25486263-25487574,25488210-25489117
Length = 739
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = -1
Query: 378 GSFHDQLPLL----RRDTVSDLCAVLPVLHHQ 295
G+ H+Q P L RRD V+D+ A L +HH+
Sbjct: 466 GAVHEQRPALSWESRRDIVADVAAGLHYVHHE 497
>10_05_0101 -
9167383-9167679,9167883-9167961,9168161-9168326,
9169201-9169299,9169969-9171361
Length = 677
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 432 LLGPEASGRIRYSDAELLG-SFHDQLPLLRRDTVSDLCAVLPVLHHQDFQL 283
L P S + SD +G SF + ++R T S + P +HH+DF+L
Sbjct: 16 LCEPSCSSKPILSDGYEIGPSF---IAMIREQTFSGSISENPYIHHRDFEL 63
>08_02_1245 - 25557201-25558199
Length = 332
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -3
Query: 205 VGHQVLTL-ESPADSVVNTSRFTPIPLKFVIAIRLMPDKSLRPLFDDCRPVNRSYSHLVC 29
+G +++ L P D V++T F K + + DK+ D C P ++H +
Sbjct: 153 IGCRIVYLCREPKDVVISTWHFMN---KVIEGFSIDFDKAFELFVDGCSPFGPIWNHYLG 209
Query: 28 FFKKRDSEP 2
++ K EP
Sbjct: 210 YWNKHVEEP 218
>05_05_0377 - 24498664-24500215,24500306-24500643
Length = 629
Score = 27.1 bits (57), Expect = 7.3
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Frame = -3
Query: 268 LGPYGSIWEHMTGLLVGTVTDVGHQVL--TLESPADSVVNTSRFTPIPLKFVIAIRLMPD 95
L P+G+ T T GH VL L SPA TP+P L +
Sbjct: 472 LAPFGASLVEYTSYADTATTIPGHYVLFWELRSPAGG-------TPVPASVFEDCCLAVE 524
Query: 94 KSLRPLFDDCRPVNRSYSHL 35
+ L ++ CR +RS L
Sbjct: 525 EGLNSVYRQCRAADRSIGPL 544
>05_03_0653 +
16617121-16617359,16618892-16618955,16619455-16619485,
16619577-16619848,16620528-16620633,16620715-16620872,
16621527-16621714,16621786-16621855,16622814-16622984,
16624363-16624838,16625625-16625871,16626158-16626490,
16627329-16627412,16627751-16627843,16627966-16628025,
16628582-16628680,16628830-16628970,16629207-16629287,
16629895-16629966,16631160-16631231,16632083-16632176,
16632257-16632339,16632455-16632532,16632914-16632970,
16633055-16633132,16633236-16633357,16633463-16633623,
16634419-16634495,16634570-16634683,16634857-16634958,
16635368-16635436,16635437-16635577,16635936-16636109,
16636934-16637063,16637137-16637276,16637369-16637446,
16637813-16637911,16638408-16638803
Length = 1749
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -3
Query: 262 PYG--SIWEHMTGLLVGTVTDVGHQVLTLES 176
PY SIW +GLL+ TD GH VL+ S
Sbjct: 120 PYAVSSIWPLPSGLLLQKSTDGGHMVLSSTS 150
>10_07_0016 + 11826066-11826773
Length = 235
Score = 26.6 bits (56), Expect = 9.7
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +3
Query: 261 GPSSQC*RAGNLDDAKQEVLRRDRSRCLFEEAEADRGKSPAAQHQSNECGRSPPVPG 431
G ++ C AG A+ E +D + EEA AD G+ AA + +PG
Sbjct: 59 GQTAAC-GAGRWAAARDEAAAQDEAAARDEEAGADGGRLHAATASTTAAAAVAGIPG 114
>08_02_1426 +
27009720-27010787,27011846-27012517,27012999-27013793,
27014914-27014943,27018095-27019987
Length = 1485
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 357 EADRGKSPAAQHQSNECGRSPPVPGER 437
+ D+ KS + S E +SPPVP ER
Sbjct: 362 QTDKTKSSSNATASTEGRKSPPVPNER 388
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 26.6 bits (56), Expect = 9.7
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 282 RAGNLDDAKQEVLRR-DRSRCLFEEAEADRGKSPAAQHQSNECGRSPPVPGERIN 443
RAG + +A + RR D +R A D+G S AAQ S PPV +R+N
Sbjct: 84 RAGAVPEADRAAPRRYDWARA----ARTDKGVSAAAQVVSGRFYVDPPVFTDRLN 134
>02_01_0123 +
896128-896429,896578-896608,896903-896995,897096-897158,
897279-897390,897947-898032,898845-898903,898990-899092,
899182-899242,899472-899554,899635-899715,900018-900077
Length = 377
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 366 RGKSPAAQHQSNECGRSPPVPGERI 440
R +PA +S CG+SPPV R+
Sbjct: 13 RAPAPAPAARSRLCGQSPPVVAPRL 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,224,533
Number of Sequences: 37544
Number of extensions: 245483
Number of successful extensions: 902
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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