Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00255
(462 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.) 122 1e-28
SB_24924| Best HMM Match : WHEP-TRS (HMM E-Value=1.1) 31 0.46
SB_10798| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0) 29 2.5
SB_15291| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8) 28 3.3
SB_42624| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035) 27 5.7
SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_35866| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34) 27 7.6
SB_26900| Best HMM Match : LIM (HMM E-Value=0.63) 27 7.6
SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05) 27 10.0
SB_35739| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
SB_30957| Best HMM Match : DEAD (HMM E-Value=4.3) 27 10.0
>SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 122 bits (294), Expect = 1e-28
Identities = 52/70 (74%), Positives = 62/70 (88%)
Frame = +2
Query: 44 IRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSN 223
+ PV RP I+KKR K+FIRHQSDRY ++ +WRKP+GIDNRVRRRFKGQYLMPNIGYGSN
Sbjct: 2 VMPVNRPRILKKRQKKFIRHQSDRYMRVGESWRKPKGIDNRVRRRFKGQYLMPNIGYGSN 61
Query: 224 KKTRHMLPNG 253
KKTR ++P+G
Sbjct: 62 KKTRFLMPDG 71
Score = 100 bits (240), Expect = 5e-22
Identities = 48/65 (73%), Positives = 55/65 (84%)
Frame = +1
Query: 244 PKWIRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 423
P +K +VHNVKELE+LMM NR Y AEIAH VSS+KRK IVERAQQLSI+VTN+ ARLR
Sbjct: 69 PDGFKKFVVHNVKELEVLMMMNRSYAAEIAHNVSSRKRKAIVERAQQLSIKVTNSNARLR 128
Query: 424 SQENE 438
S+ENE
Sbjct: 129 SEENE 133
>SB_24924| Best HMM Match : WHEP-TRS (HMM E-Value=1.1)
Length = 1002
Score = 31.1 bits (67), Expect = 0.46
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 306 KQEVLRRDRSRCLFEEAEADRGKSPAAQHQSNECGRSPPVPGER 437
+Q ++ R C +A G P+ H+ + GR PVPG+R
Sbjct: 774 QQRLIEHHRKNCPRLQATIRFGPDPSVAHRYRKQGRPVPVPGKR 817
>SB_10798| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 888
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 300 DAKQ-EVLRRDRSRCLFEEAEADRGKSPAAQHQSNECGRSPPVPGER 437
D+KQ EV R + +F+ A S H+ + GR PVPG+R
Sbjct: 662 DSKQLEVFREEWDGVVFDAAIEKAHPSDIVAHRYRKQGRPVPVPGKR 708
>SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 839
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +1
Query: 208 RLRFQQEDPSYAPKWIRKVLVHNVKELEILMMQNRKYCAEIAHG-VSSKKRKLI 366
+L+ Q+ PS P+ +++V ++E E+ RK+C EIA+ V S R+++
Sbjct: 271 KLKCQKYWPSANPEEYGRLVVTPLEEEELSHYVIRKFCIEIANSDVESPAREIV 324
>SB_15291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 747
Score = 28.3 bits (60), Expect = 3.3
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +1
Query: 238 YAPKWIRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 417
Y PK K V K ++++ N YCA A SKK +L E+ ++L R + A
Sbjct: 64 YEPKVSAKQRVEEFKGEDLIVRNNEVYCA--ACKEVSKKHELNKEKLKKLGKREEDIAQA 121
Query: 418 LRSQE 432
L +
Sbjct: 122 LHKYD 126
>SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)
Length = 361
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 396 SDAELLGSFHDQLPLLRRDTVSDLCAVLPVLHH 298
S+ E GSF D++ RRDT S +C +L H
Sbjct: 300 SETERGGSFLDEVASPRRDTASPVCLWGAILFH 332
>SB_42624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 300 DAKQ-EVLRRDRSRCLFEEAEADRGKSPAAQHQSNECGRSPPVPGER 437
D+KQ EV R + F+ A S H+ + GR PVPG+R
Sbjct: 170 DSKQLEVFREEWDGVAFDAAIEQVHPSHIVAHRYRKKGRPVPVPGKR 216
>SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035)
Length = 124
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 364 SASASSKRHRERSLRSTSCFASSRFPAL*HCEL 266
S + +R +RS + ++C AS R P+ CEL
Sbjct: 21 STEHAYQRRTKRSSKESACCASGRMPSRARCEL 53
>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -3
Query: 355 ASSKRHRERSLRSTSCFASSRFPAL*HCELGPYGSIWEHMTGLLVGTV 212
++ KR+ R + CF ++R + + E+ PY S+ LLV V
Sbjct: 633 SAGKRYGSLRYRHSRCFGAARDSEISYSEVVPYWSVLLRTRALLVEAV 680
>SB_35866| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)
Length = 758
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = +1
Query: 172 QAIQGSILDAQHRLRFQQEDPSYAPKWIRKVLVHNVKELEILMMQNRK 315
+ ++G++ + +++Q+E PK RK + ++ELE ++ K
Sbjct: 594 KVLKGTLEITEGEVKYQREHTGRTPKGKRKEIWREIRELETILKDVHK 641
>SB_26900| Best HMM Match : LIM (HMM E-Value=0.63)
Length = 333
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 306 KQEVLRRDRSRCLFEEAEADRGKSPAAQHQSNECGRSPPVPGER 437
+Q ++ R C A P+ H+ + GR PVPG+R
Sbjct: 95 QQRLVEHQRKNCPRLPATIRFDPDPSVAHRYRKQGRPVPVPGKR 138
>SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05)
Length = 889
Score = 26.6 bits (56), Expect = 10.0
Identities = 22/92 (23%), Positives = 40/92 (43%)
Frame = +1
Query: 163 QSPQAIQGSILDAQHRLRFQQEDPSYAPKWIRKVLVHNVKELEILMMQNRKYCAEIAHGV 342
Q P+ IQ D RLR +EDPS + +K ++ + + E AH
Sbjct: 68 QEPETIQVITKDLIRRLRIPEEDPSGRSMILDWSEFSRIKSASRVISKEER---EAAHNE 124
Query: 343 SSKKRKLIVERAQQLSIRVTNAAARLRSQENE 438
+K++ + +++ I + L+ +ENE
Sbjct: 125 MKRKKEELQNASEERKIFM--QMMDLKRKENE 154
>SB_35739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 306 KQEVLRRDRSRCLFEEAEADRGKSPAAQHQSNECGRSPPVPGER 437
+Q ++ R C A P+ H+ + GR PVPG+R
Sbjct: 605 QQRLVEHHRKNCPRLPATIRFDHDPSVAHRYRKQGRPVPVPGKR 648
>SB_30957| Best HMM Match : DEAD (HMM E-Value=4.3)
Length = 314
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 306 KQEVLRRDRSRCLFEEAEADRGKSPAAQHQSNECGRSPPVPGER 437
+Q ++ R C A P+ H+ + GR PVPG+R
Sbjct: 265 QQRLVEHHRKNCPRLPATIRFDHDPSVAHRYRKQGRPVPVPGKR 308
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,032,036
Number of Sequences: 59808
Number of extensions: 284278
Number of successful extensions: 1176
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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