Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00254
         (810 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.9  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    22   5.0  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    22   5.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   5.0  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   6.6  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   8.8  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   8.8  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 728 SECTLRSLARRAKLMVHNWEYLGKQ 802
           +ECTL+  A   +++   W  LG++
Sbjct: 499 AECTLKESAAINQILGRRWHALGRE 523


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 728 SECTLRSLARRAKLMVHNWEYLGKQ 802
           +ECTL+  A   +++   W  LG++
Sbjct: 391 AECTLKESAAINQILGRRWHALGRE 415


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
 Frame = +3

Query: 603 PVVLAVACYDIGEYVRHYPRGKHIIE--QLGGKQRVMYLLSHDDPNV--RYEALLAVRNL 770
           PV+L  +     EY+ + P  K+II+    G   +V  LL +    +   Y+AL      
Sbjct: 419 PVILWTSTLTQKEYLENLPSDKYIIQIWTTGSDPQVRNLLDNGYRVILSNYDALYFDCGF 478

Query: 771 --WFTTGN 788
             W T GN
Sbjct: 479 AGWVTDGN 486


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 504 TNGQVLARKRGSFERTCQELLR 569
           TNG+   +KRG F +    +LR
Sbjct: 173 TNGKKNQKKRGIFPKVATNILR 194


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 504 TNGQVLARKRGSFERTCQELLR 569
           TNG+   +KRG F +    +LR
Sbjct: 329 TNGKKNQKKRGIFPKVATNILR 350


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 163 LAEKMNKFNVIPILADILSDSVKEKVTRIVLQC 261
           L E  NK   +P+ +  L  ++ ++  ++V+QC
Sbjct: 121 LIETGNKPPTLPVTSIHLRGAIGQRSCQVVIQC 153


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 147 QNPETKYKLILNLEVHSGGQN 85
           QN  +KYK ++     SGG N
Sbjct: 170 QNRRSKYKKMMKAAQVSGGNN 190


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -1

Query: 414 HSNIPHHS*YPHHQNASVQGLTVASVPCTV 325
           H  + HH+   HH      G T ++ P ++
Sbjct: 343 HQAMLHHNPMSHHLKQEPSGFTSSNHPFSI 372


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,131
Number of Sequences: 336
Number of extensions: 4052
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)