Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00254
(810 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0823 + 21765960-21766064,21766166-21766327,21766616-217667... 89 5e-18
11_06_0506 - 24380469-24380632,24381737-24383893,24384488-243845... 34 0.12
05_01_0139 + 929343-930188 32 0.62
05_01_0382 + 2985526-2986659 31 1.4
10_02_0060 - 4808506-4808535,4808564-4809588,4810125-4810292,481... 30 1.9
06_03_0722 - 23869981-23870250 30 1.9
01_01_1115 + 8828544-8828620,8829608-8829779,8829873-8830183,883... 29 3.3
01_01_1114 - 8820996-8821538,8826753-8827178 29 3.3
01_01_1113 - 8815890-8816609,8816656-8817318 29 3.3
06_03_0007 - 15325720-15325739,15326236-15326383,15326512-153270... 29 4.4
02_05_0184 + 26543156-26544019 29 4.4
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 29 4.4
06_01_0243 - 1837830-1837886,1837969-1838016,1838113-1838255,183... 28 7.6
05_03_0175 + 9222749-9222819,9223045-9223116,9223426-9223497,922... 28 7.6
01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14... 28 7.6
>07_03_0823 +
21765960-21766064,21766166-21766327,21766616-21766741,
21766831-21766956,21767519-21767698,21768204-21768452
Length = 315
Score = 88.6 bits (210), Expect = 5e-18
Identities = 43/133 (32%), Positives = 80/133 (60%), Gaps = 1/133 (0%)
Frame = +3
Query: 378 DEDIMNDVEYLNERLQASVQDLSSFDQYATEVKSGAWN-GPRYTNGQVLARKRGSFERTC 554
DED+++ + L L+ +++ LSSF++Y +V G + P + + +FE
Sbjct: 172 DEDLLDALNQLEIGLKDNLKKLSSFEKYKQQVLLGHLDWSPMHKDPSFWRENINNFEEND 231
Query: 555 QELLRTLVHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPN 734
++LR L+ +++ S D LAVACYD+ ++++++P G+ ++ L K RVM L++H++
Sbjct: 232 FQILRVLMTIIDTSADTTALAVACYDLSQFLQYHPSGRIVVADLKAKDRVMKLMNHENAE 291
Query: 735 VRYEALLAVRNLW 773
VR ALL V+ L+
Sbjct: 292 VRKNALLCVQRLF 304
Score = 56.4 bits (130), Expect = 3e-08
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Frame = +1
Query: 7 CLQMMLRIDEYRFAFLSVDGISTLLSILA---SRVNFQVQYQLVFCLWVLTFNPLLAEKM 177
CL +LR R F+ DG+ L+ +++ ++ + Q+ Y+ C+W+L+F + +
Sbjct: 52 CLATLLREQYVRALFVQADGVKLLIPLISPASTQQSIQLLYETCLCIWLLSFYDAAVDYL 111
Query: 178 NKFNVIPILADILSDSVKEKVTRIVL 255
+ V+P L +++ S KEKV R+V+
Sbjct: 112 STTRVMPRLVEVVKGSTKEKVVRVVI 137
>11_06_0506 -
24380469-24380632,24381737-24383893,24384488-24384541,
24384543-24384597,24384914-24384916,24385192-24385231,
24385576-24385632,24388124-24388412,24389764-24389771,
24390633-24390688,24391207-24391488,24391651-24391811,
24391887-24392121,24392860-24392943,24393022-24393117,
24393333-24394055,24396523-24396987
Length = 1642
Score = 34.3 bits (75), Expect = 0.12
Identities = 24/76 (31%), Positives = 37/76 (48%)
Frame = +3
Query: 549 TCQELLRTLVHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDD 728
+C + LV LL S V +A V PR K I+ Q G ++++L D
Sbjct: 436 SCDTFIAPLVQLLYDSSMSVQVAALGAICNIAVNLTPR-KSILLQSGAVSQLVHLSKSMD 494
Query: 729 PNVRYEALLAVRNLWF 776
P +R +A+ A+RN+ F
Sbjct: 495 PTLRLKAVWALRNIMF 510
>05_01_0139 + 929343-930188
Length = 281
Score = 31.9 bits (69), Expect = 0.62
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +3
Query: 609 VLAVACYDIGEYVRHYPRGKHI--IEQLGGKQRVMYLL 716
++ VA Y G+ RH PRGKHI + L G M LL
Sbjct: 95 MVTVAGYTAGQRARHVPRGKHIAAVSILAGTSVTMALL 132
>05_01_0382 + 2985526-2986659
Length = 377
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 669 VCRAD-SGVHILRCHSKRRRVRQGRGSSPASAPGCGA 562
VCRA +G RCH+ R V R + P +A GCGA
Sbjct: 162 VCRAAVAGGEYRRCHALERLVDAIRVACPHAAHGCGA 198
>10_02_0060 -
4808506-4808535,4808564-4809588,4810125-4810292,
4811202-4811652
Length = 557
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -1
Query: 624 KRRRVRQGRGSSPASAPGCGAVLGTFV---QTSRVFAPELG 511
KRRR R G+G+ P S+P + FV QT + P LG
Sbjct: 4 KRRRRRSGKGNVPPSSPPTAILAAVFVDSDQTVDLVHPSLG 44
>06_03_0722 - 23869981-23870250
Length = 89
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 666 CRADSGVHILRCHSKRRRVRQGRGSSPASAP-GCGAVL 556
C A +H + RRR G S P+S P GCG VL
Sbjct: 30 CAAIEELHRRKRRGPRRRSTTGTSSRPSSTPKGCGGVL 67
>01_01_1115 +
8828544-8828620,8829608-8829779,8829873-8830183,
8830934-8830983,8832349-8832405,8832742-8832761,
8834637-8835236,8835283-8836002
Length = 668
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +1
Query: 508 TAKFWRENAARLNERAKNCSAPWCTCWRRAATLSYSPSL 624
+A W+ AA + R C W RR TLS SP L
Sbjct: 449 SAYLWKALAAVVGSRDARCRMVWWVDGRRRLTLSSSPEL 487
>01_01_1114 - 8820996-8821538,8826753-8827178
Length = 322
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +1
Query: 508 TAKFWRENAARLNERAKNCSAPWCTCWRRAATLSYSPSL 624
+A W+ AA + R C W RR TLS SP L
Sbjct: 261 SAYLWKALAAVVGSRDARCRMVWWVDGRRRLTLSSSPEL 299
>01_01_1113 - 8815890-8816609,8816656-8817318
Length = 460
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +1
Query: 508 TAKFWRENAARLNERAKNCSAPWCTCWRRAATLSYSPSL 624
+A W+ AA + R C W RR TLS SP L
Sbjct: 241 SAYLWKALAAVVGSRDARCRMVWWVDGRRRLTLSSSPEL 279
>06_03_0007 -
15325720-15325739,15326236-15326383,15326512-15327025,
15327077-15327507
Length = 370
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 482 RLEWSPVHKRPSSGAKTRLV*TNVPRT-APHP 574
+LEW P K+PSS K++ V P+T AP P
Sbjct: 199 KLEW-PARKKPSSALKSKKVWREKPKTPAPSP 229
>02_05_0184 + 26543156-26544019
Length = 287
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 627 SKRRRVRQGRGSSPASAPGCGAVLG 553
SK +++++ R +SPA PGCG G
Sbjct: 32 SKHKQLKRKRSTSPAPPPGCGGGQG 56
>01_06_1535 +
38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 29.1 bits (62), Expect = 4.4
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Frame = +3
Query: 279 KPEDQQVAKEHCIAMVQCKVLKQLSILEQKRSDDEDIMNDVEYLNERLQASVQDLSSFDQ 458
+P D V HC MV+ + + L E++ + ++D+E ERL S + ++
Sbjct: 52 EPMDDMVCTYHCRQMVKSEFMVALDTAEKQVQEYRATLDDME---ERLSKSEDERATCQD 108
Query: 459 YATEVKS--GAWNGPRYTNGQVLARKRGSF-ERTCQEL 563
V+ A G + L ++ G F ER C ++
Sbjct: 109 KLNYVEQELAATKGRESAMQERLLKEVGDFQERYCDQI 146
>06_01_0243 -
1837830-1837886,1837969-1838016,1838113-1838255,
1838784-1838982,1839085-1839265,1839857-1840228,
1841453-1841658
Length = 401
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = -3
Query: 166 PIGD*MSKPRDKIQVDIEPGSSLW-RPESTVRWIYHRQRGKQSGIHRYAA 20
P G P +++ P S++W R + WIYH + + H Y A
Sbjct: 118 PHGTSEVSPSSRLRHHTSPESTIWTRDPADWPWIYHIRMDRGGSFHTYPA 167
>05_03_0175 +
9222749-9222819,9223045-9223116,9223426-9223497,
9223609-9223680,9223765-9223836,9224408-9224482,
9224587-9224658,9224912-9224977,9225051-9225095,
9225220-9225724,9225807-9226005,9226080-9226238,
9226316-9226434,9226556-9226766,9226905-9227136,
9227219-9227369,9227458-9227781
Length = 838
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 623 SDGEYDRVAALLQQVHQGAEQFLARSFKRAAFSRQNL 513
SDG V L Q HQG QF+A +A +NL
Sbjct: 537 SDGRVIAVKQLSQSSHQGKSQFVAEVTTISAMQHRNL 573
>01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-148927,
149056-149061,150811-150915,151048-151539,151629-152025,
152178-153646,154010-154450,154543-155214
Length = 1342
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 408 LNERLQASVQDLSSFDQYATEVKSGAWNGPRYTNGQVLARKRGSFERTCQELLRTLVHL 584
LN +L S Q + + ++ GA NG ++ ++LAR RG+ E + L ++L
Sbjct: 1191 LNTQLVNSSQPSETSNGRGQSLQVGALNGKALSSAELLARIRGTREGAASDALEHQLNL 1249
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,903,444
Number of Sequences: 37544
Number of extensions: 446125
Number of successful extensions: 1427
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1424
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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