Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00254
(810 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.) 146 2e-35
SB_48986| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_52673| Best HMM Match : Lectin_C (HMM E-Value=0.017) 29 3.4
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_51664| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015) 28 7.8
SB_14911| Best HMM Match : Amelogenin (HMM E-Value=1.7) 28 7.8
>SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 146 bits (354), Expect = 2e-35
Identities = 87/196 (44%), Positives = 119/196 (60%), Gaps = 24/196 (12%)
Frame = +3
Query: 255 AVFRNLIEKPEDQQVAKEHCIAMVQCKVLKQLSILEQKRSDDEDIMNDVEYLNERLQASV 434
A RNL++KPE+++ +E ++M+Q K+L LSIL K DEDI D+EY+ E+L V
Sbjct: 250 ATLRNLLDKPEEKK--RESAVSMIQSKLLPVLSILNGKTWADEDIKADIEYVYEKLNEVV 307
Query: 435 QDLSSFDQYATEVKSGA------------W--NGPRYTNGQVLARKRGSFERTC--QELL 566
QDLS+FD+YA EV+SG W N R + K + C +E L
Sbjct: 308 QDLSNFDEYAAEVRSGRLEWSPVHKSEKFWRENAHRLNENKYELLKYLVLHKLCSSKEFL 367
Query: 567 RTLV--------HLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSH 722
L+ LLE S DP++LAVA +D GEYVRHYPRGK ++E LG K +VM +++H
Sbjct: 368 TVLIPKPSRVLNKLLESSEDPLILAVAAHDTGEYVRHYPRGKTVLESLGCKGKVMQMMTH 427
Query: 723 DDPNVRYEALLAVRNL 770
+DP+VR EALLAV+ L
Sbjct: 428 NDPSVRKEALLAVQKL 443
Score = 95.5 bits (227), Expect = 5e-20
Identities = 45/86 (52%), Positives = 69/86 (80%), Gaps = 2/86 (2%)
Frame = +1
Query: 1 ARCLQMMLRIDEYRFAFLSVDGISTLLS-ILASRVNFQVQYQLVFCLWVLTFNPLLAEKM 177
A LQ+MLR++ Y+ AF ++GI+++++ +L +++ FQ+QYQL+F LW+L+F+P +AE+M
Sbjct: 163 ALSLQLMLRVESYKEAFFKLEGINSIVATLLRNKIGFQLQYQLIFTLWLLSFDPRIAERM 222
Query: 178 NKFN-VIPILADILSDSVKEKVTRIV 252
N VIP+LADIL DS KEKVTRI+
Sbjct: 223 VGNNAVIPVLADILRDSDKEKVTRII 248
Score = 33.9 bits (74), Expect = 0.16
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +2
Query: 764 KLMVHNWEYLGKQLE 808
KLMVHNWEYLGK L+
Sbjct: 442 KLMVHNWEYLGKALK 456
>SB_48986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 30.3 bits (65), Expect = 1.9
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 6/126 (4%)
Frame = +3
Query: 369 RSDDEDIMNDVEYLNERLQASVQDLSSFDQYATEVKSGAWNGPRYTNGQV-LARKRGSFE 545
RS ED D+EY+ E ++ + D+Y V + ++ L + GSF
Sbjct: 74 RSTLEDPREDLEYILESVEKLNSTCARLDRYGHGVPCIRPVRDLCSKLRLQLNNEHGSFN 133
Query: 546 RTCQELLRTLV---HLLEKSRDPVVLAV--ACYDIGEYVRHYPRGKHIIEQLGGKQRVMY 710
RT +EL R V + + D + AV YD EY+ K + +L G +
Sbjct: 134 RTLEELARASVPGNRAIVECVDEIRNAVNRVAYDESEYIPRLEDIKQYLGELSGIINTVL 193
Query: 711 LLSHDD 728
L + D
Sbjct: 194 QLVYQD 199
>SB_52673| Best HMM Match : Lectin_C (HMM E-Value=0.017)
Length = 269
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 354 LTVASVPCTVPWQCSAL 304
L V + PCT PWQC++L
Sbjct: 126 LAVKAEPCTSPWQCNSL 142
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +3
Query: 342 KQLSILEQKRSDDEDIMNDVEYLNERLQASVQDLSSFDQYATEVKS 479
++L +E ++S DE D++ +RLQ Q++ S + + T +KS
Sbjct: 503 RRLHYMETEKSGDES-QQDLQQKQKRLQKFRQEIQSREYHITRIKS 547
>SB_51664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 633 CHSKRRRVRQGRGSSPASAPGCGAV 559
C S+R+R+ Q +SPA G GAV
Sbjct: 125 CSSRRKRMSQSSENSPAMLSGAGAV 149
>SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015)
Length = 798
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 157 PLLAEKMNKFNVIPILADILSDSVKEKVTRIVLQC 261
P L KM F + PI+A++ + S+KE + +++C
Sbjct: 591 PALILKMFAFELSPIVAELYNTSLKEVMVNDLIRC 625
>SB_14911| Best HMM Match : Amelogenin (HMM E-Value=1.7)
Length = 326
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 497 PVHKRPSSGAKTRLV*TNVPRTAPHPG 577
P RP+S A RL+ T P + P PG
Sbjct: 163 PASSRPTSRASERLISTRPPASPPKPG 189
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,220,636
Number of Sequences: 59808
Number of extensions: 521393
Number of successful extensions: 1502
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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