Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00254
(810 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50199-6|AAA91266.1| 470|Caenorhabditis elegans Vacuolar h atpa... 167 6e-42
U41109-12|AAB37043.1| 451|Caenorhabditis elegans Hypothetical p... 141 6e-34
Z75548-1|CAA99911.1| 776|Caenorhabditis elegans Hypothetical pr... 29 3.0
AL110498-5|CAL69743.1| 134|Caenorhabditis elegans Hypothetical ... 29 3.0
L12018-11|AAA65467.1| 348|Caenorhabditis elegans Hypothetical p... 29 3.9
AL110478-4|CAB54346.1| 546|Caenorhabditis elegans Hypothetical ... 29 3.9
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 29 5.2
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 29 5.2
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 29 5.2
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr... 28 6.9
U41263-5|AAC24427.1| 400|Caenorhabditis elegans Hypothetical pr... 28 9.1
>U50199-6|AAA91266.1| 470|Caenorhabditis elegans Vacuolar h atpase
protein 15 protein.
Length = 470
Score = 167 bits (407), Expect = 6e-42
Identities = 82/174 (47%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Frame = +3
Query: 255 AVFRNLIEKPEDQQVAKEHCIAMVQCKVLKQLSILEQKRSDDEDIMNDVEYLNERLQASV 434
A F N++ K ++++V +E + MVQCK LK L +++ K+ DD D+ +DV++L E L SV
Sbjct: 274 ASFVNILSKVDEREVKREAALQMVQCKTLKTLELMDAKKYDDPDLEDDVKFLTEELTLSV 333
Query: 435 QDLSSFDQYATEVKSGA--WNGPRYTNGQVLARKRGSFERTCQELLRTLVHLLEKSRDPV 608
DLSS+D+Y +EV+SG W+ P + + + F E+++ L+ LLE S DP+
Sbjct: 334 HDLSSYDEYYSEVRSGRLQWS-PVHKSEKFWRENASKFNDKQFEVVKILIKLLESSHDPL 392
Query: 609 VLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEALLAVRNL 770
+L VA +DIGEYVRHYPRGK ++EQ GK VM LL+ +DPNVRY ALLAV+ L
Sbjct: 393 ILCVASHDIGEYVRHYPRGKTVVEQYQGKAAVMRLLTAEDPNVRYHALLAVQKL 446
Score = 103 bits (246), Expect = 2e-22
Identities = 48/85 (56%), Positives = 60/85 (70%)
Frame = +1
Query: 1 ARCLQMMLRIDEYRFAFLSVDGISTLLSILASRVNFQVQYQLVFCLWVLTFNPLLAEKMN 180
ARCLQMMLR DEYR F+ DG+ TL++ L + NFQ+QYQL+F +W LTFN +A K
Sbjct: 189 ARCLQMMLRHDEYRHEFVDSDGVQTLVTALNGKTNFQLQYQLIFAVWCLTFNADIARKAP 248
Query: 181 KFNVIPILADILSDSVKEKVTRIVL 255
+I L DILS+S KEKV RI+L
Sbjct: 249 SLGLIQALGDILSESTKEKVIRIIL 273
Score = 36.7 bits (81), Expect = 0.020
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +2
Query: 764 KLMVHNWEYLGKQLE 808
KLMVHNWEYLGKQL+
Sbjct: 445 KLMVHNWEYLGKQLD 459
>U41109-12|AAB37043.1| 451|Caenorhabditis elegans Hypothetical
protein F52E1.10 protein.
Length = 451
Score = 141 bits (341), Expect = 6e-34
Identities = 74/173 (42%), Positives = 108/173 (62%), Gaps = 1/173 (0%)
Frame = +3
Query: 255 AVFRNLIEKPEDQQVAKEHCIAMVQCKVLKQLSILEQKRSDDEDIMNDVEYLNERLQASV 434
+ RNLI +D + K+ + M+Q ++ +L LE ++ D D++ D+ YL L+ V
Sbjct: 267 STLRNLITSNQDVYMKKQAALQMIQNRIPTKLDHLENRKFTDVDLVEDMVYLQTELKKVV 326
Query: 435 QDLSSFDQYATEVKSGAWNGPRYTNGQVLARKRGS-FERTCQELLRTLVHLLEKSRDPVV 611
Q L+SFD+Y E++ G+ + +V + QELL+ LV +LEKS DP+V
Sbjct: 327 QVLTSFDEYENELRQGSLHWSPAHKCEVFWNENAHRLNDNRQELLKLLVAMLEKSNDPLV 386
Query: 612 LAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEALLAVRNL 770
L VA +DIGE+VR+YPRGK +EQLGGK+ +M LL+ DPNVRY ALLA + L
Sbjct: 387 LCVAAHDIGEFVRYYPRGKLKVEQLGGKEAMMRLLTVKDPNVRYHALLAAQKL 439
Score = 79.4 bits (187), Expect = 3e-15
Identities = 58/188 (30%), Positives = 94/188 (50%), Gaps = 6/188 (3%)
Frame = +1
Query: 4 RCLQMMLRIDEYRFAFLSVDGISTLLSILAS--RVNFQVQYQLVFCLWVLTFNPLLAEKM 177
RC+Q + R D YR +F++++G +L L S + FQ+QYQ++FC+W+LTFN AE
Sbjct: 181 RCMQTLFRFDPYRVSFVNINGYDSLTHALYSTRKCGFQIQYQIIFCMWLLTFNGHAAEVA 240
Query: 178 NKFNVIPILADILSDSVKEKVTRIVLQCSGI*LKNLKINRLPKSTALPWYSARY*SNCQS 357
N+I ++ IL + KEKV RIV+ + + + + K AL R +
Sbjct: 241 LSGNLIQTISGILGNCQKEKVIRIVVSTLRNLITSNQDVYMKKQAALQMIQNRIPTKLDH 300
Query: 358 L-NRSVLMMRIL*MMWNI*MNVYKLPYRILVLLINMLLK*RVAPGMV---PGTQTAKFWR 525
L NR + ++ M + + K+ + VL + + G + P + FW
Sbjct: 301 LENRKFTDVDLVEDMVYLQTELKKV---VQVLTSFDEYENELRQGSLHWSPAHKCEVFWN 357
Query: 526 ENAARLNE 549
ENA RLN+
Sbjct: 358 ENAHRLND 365
>Z75548-1|CAA99911.1| 776|Caenorhabditis elegans Hypothetical
protein R90.1 protein.
Length = 776
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +3
Query: 426 ASVQDLSSFDQYATEVKSGAWNGPRYTNGQVLARKRGSFERTCQELL 566
A +SSFD ++ + N R T ++++ +GSF+ +C+E++
Sbjct: 471 AKTNKISSFDNTNAQMDENSANNVR-TQQTLMSKWQGSFDASCEEMM 516
>AL110498-5|CAL69743.1| 134|Caenorhabditis elegans Hypothetical
protein Y64G10A.10 protein.
Length = 134
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 351 TVASVPCTVPWQCSALWQPVDLQVFQL 271
TVAS+ T P CS W V+L V Q+
Sbjct: 83 TVASILATAPSSCSGNWYSVELSVEQI 109
>L12018-11|AAA65467.1| 348|Caenorhabditis elegans Hypothetical
protein F22B7.1 protein.
Length = 348
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 303 KEHCIAMVQCKVLKQLS-ILEQKRSDDEDIMNDVEYLNERLQASVQDLSSFDQYATEVKS 479
+E A V+ K ++L +++ K + + N + +NE L S+ +L FD+ +V +
Sbjct: 89 RETLKAYVKDKTYEKLKYVIDSKVKMNRNEKNVLGRINESLVQSIDNLEHFDEITVDVVN 148
Query: 480 GAWNGPRY 503
G N Y
Sbjct: 149 GYHNASVY 156
>AL110478-4|CAB54346.1| 546|Caenorhabditis elegans Hypothetical
protein Y26D4A.10 protein.
Length = 546
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/70 (22%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +3
Query: 246 YCAAVFRNLIEKPEDQ--QVAKEHCIAMVQCKVLKQLSILEQKRSDDEDIMNDVEYLNER 419
YC + N++E +++ +++++ ++ + K+ + + R D+DI N+V +N R
Sbjct: 395 YCLVMSENIVEIKDNRIKVISRQNEADRIKKMISKRDVLAAKLRVLDDDIRNEVARMNAR 454
Query: 420 LQASVQDLSS 449
+A D++S
Sbjct: 455 REAYDLDVAS 464
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +3
Query: 255 AVFRNLIEKPEDQQVAKEHCIAMVQCK---VLKQLSILEQKRSDDEDIMNDVEYLNERLQ 425
++F NL E + Q E +A ++ + KQLS L + +D+ED DV+ ++++
Sbjct: 895 SLFTNL-ESTKTQLSDAEERLAKLEAQQKDASKQLSELNDQLADNEDRTADVQRAKKKIE 953
Query: 426 ASVQDL 443
A V+ L
Sbjct: 954 AEVEAL 959
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein
F11C3.3 protein.
Length = 1963
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +3
Query: 255 AVFRNLIEKPEDQQVAKEHCIAMVQCK---VLKQLSILEQKRSDDEDIMNDVEYLNERLQ 425
++F NL E + Q E +A ++ + KQLS L + +D+ED DV+ ++++
Sbjct: 895 SLFTNL-ESTKTQLSDAEERLAKLEAQQKDASKQLSELNDQLADNEDRTADVQRAKKKIE 953
Query: 426 ASVQDL 443
A V+ L
Sbjct: 954 AEVEAL 959
>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
protein.
Length = 1966
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +3
Query: 255 AVFRNLIEKPEDQQVAKEHCIAMVQCK---VLKQLSILEQKRSDDEDIMNDVEYLNERLQ 425
++F NL E + Q E +A ++ + KQLS L + +D+ED DV+ ++++
Sbjct: 898 SLFTNL-ESTKTQLSDAEERLAKLEAQQKDASKQLSELNDQLADNEDRTADVQRAKKKIE 956
Query: 426 ASVQDL 443
A V+ L
Sbjct: 957 AEVEAL 962
>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical protein
F36H2.3 protein.
Length = 1388
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 682 CSMMCLPRG*WRTYSPMS*QATASTTGS 599
CS + +P G TYSP S T+ T+G+
Sbjct: 1055 CSALTIPSGAQATYSPFSLSTTSFTSGT 1082
>U41263-5|AAC24427.1| 400|Caenorhabditis elegans Hypothetical
protein T19D12.7 protein.
Length = 400
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -2
Query: 251 TIRVTFSLTESLRISAKIGITLNLFIFSA 165
T R+TFSL ES+ + A + ++ ++F SA
Sbjct: 8 TARITFSLLESIFVVASVFLSTHIFYSSA 36
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,427,916
Number of Sequences: 27780
Number of extensions: 375843
Number of successful extensions: 1227
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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