Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00254
         (810 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42050.1 68416.m04311 vacuolar ATP synthase subunit H family ...    91   6e-19
At5g03060.1 68418.m00254 expressed protein ; expression supporte...    32   0.52 
At1g51350.1 68414.m05775 armadillo/beta-catenin repeat family pr...    31   0.68 
At2g37330.1 68415.m04578 expressed protein  and genefinder             31   0.90 
At4g02150.1 68417.m00287 importin alpha-2 subunit identical to i...    31   1.2  
At3g44700.1 68416.m04807 expressed protein contains Pfam profile...    29   2.8  
At5g63220.1 68418.m07936 expressed protein contains Pfam PF04190...    29   3.7  
At1g48760.2 68414.m05457 delta-adaptin, putative similar to SP|O...    29   4.8  
At1g48760.1 68414.m05456 delta-adaptin, putative similar to SP|O...    29   4.8  
At5g53050.2 68418.m06590 hydrolase, alpha/beta fold family prote...    28   8.4  
At4g14990.1 68417.m02303 expressed protein                             28   8.4  

>At3g42050.1 68416.m04311 vacuolar ATP synthase subunit H family
           protein identical to probable vacuolar ATP synthase
           subunit H (EC 3.6.3.14)(V-ATPase H subunit) (Vacuolar
           proton pump H subunit) (Vacuolar proton pump subunit
           SFD) SP:Q9LX65 from [Arabidopsis thaliana]; contains
           Pfam PF03224: V-ATPase subunit H
          Length = 441

 Score = 91.5 bits (217), Expect = 6e-19
 Identities = 48/140 (34%), Positives = 81/140 (57%), Gaps = 2/140 (1%)
 Frame = +3

Query: 357 LEQKRSDDEDIMNDVEYLNERLQASVQDLSSFDQYATEVKSGA--WNGPRYTNGQVLARK 530
           L+ +   DED+++ +  L E L+  ++ LSSFD+Y  EV  G   WN P +         
Sbjct: 291 LKTQAWSDEDLLDALNQLEEGLKDKIKKLSSFDKYKQEVLLGHLDWN-PMHKETNFWREN 349

Query: 531 RGSFERTCQELLRTLVHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMY 710
              FE    ++LR L+ +L+ S DP  LAVAC+DI ++++++  G+ I+  L  K+RVM 
Sbjct: 350 VTCFEENDFQILRVLLTILDTSSDPRSLAVACFDISQFIQYHAAGRVIVADLKAKERVMK 409

Query: 711 LLSHDDPNVRYEALLAVRNL 770
           L++H++  V   A+L ++ L
Sbjct: 410 LINHENAEVTKNAILCIQRL 429



 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
 Frame = +1

Query: 7   CLQMMLRIDEYRFAFLSVDGISTLLSILA---SRVNFQVQYQLVFCLWVLTFNPLLAEKM 177
           CL  +L+    R +F+  DG+  L+ +++   ++ + Q+ Y+   C+W+L++     E +
Sbjct: 178 CLSSLLKEPVVRSSFVQADGVKLLVPLISPASTQQSIQLLYETCLCIWLLSYYEPAIEYL 237

Query: 178 NKFNVIPILADILSDSVKEKVTRIVL 255
                +  L +++  S KEKV R+V+
Sbjct: 238 ATSRTMQRLTEVVKHSTKEKVVRVVI 263


>At5g03060.1 68418.m00254 expressed protein ; expression supported
           by MPSS
          Length = 292

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 18/66 (27%), Positives = 36/66 (54%)
 Frame = +3

Query: 261 FRNLIEKPEDQQVAKEHCIAMVQCKVLKQLSILEQKRSDDEDIMNDVEYLNERLQASVQD 440
           F+ + E  E  +   +  I  ++ K+L  L  LE++RS+ E+ M +++ +    +A + D
Sbjct: 60  FKQMNEMNEIMKFQYQKQIKELEEKILSLLKDLEKERSEKEEYMKEMKGMISEKEAIIND 119

Query: 441 LSSFDQ 458
           LS  +Q
Sbjct: 120 LSVKNQ 125


>At1g51350.1 68414.m05775 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 666

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 23/68 (33%), Positives = 31/68 (45%)
 Frame = +3

Query: 573 LVHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEAL 752
           LV LL      V +AV    +   V  +   K    + GG +++  L    DPN R  AL
Sbjct: 412 LVQLLHDPSSSVQVAVLGA-LNNIVMDFSSPKSSFIEYGGIKQLTELSKSMDPNTRCSAL 470

Query: 753 LAVRNLWF 776
            A+RNL F
Sbjct: 471 RALRNLMF 478


>At2g37330.1 68415.m04578 expressed protein  and genefinder
          Length = 273

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 609 VLAVACYDIGEYVRHYPRGKHI--IEQLGGKQRVMYLL 716
           +++VA Y  G+  RH PRGK++  +  L G    M+LL
Sbjct: 87  MVSVAGYTAGQRARHVPRGKYVAGLSILAGTSITMFLL 124


>At4g02150.1 68417.m00287 importin alpha-2 subunit identical to
           importin alpha-2 subunit (Karyopherin alpha-2 subunit)
           (KAP alpha) SP:O04294 from [Arabidopsis thaliana]
          Length = 531

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +3

Query: 537 SFERTCQELLRTLVHLLEKSRDPVVLAVACYDIGEYVRHYPRGK-HIIEQLGGKQRVMYL 713
           +FE+T Q  L  L  L++ S D  VL  AC+ +  Y+      K   + + G   R++ L
Sbjct: 239 AFEQT-QPALPVLERLVQ-SMDEEVLTDACWALS-YLSDNSNDKIQAVIEAGVVPRLIQL 295

Query: 714 LSHDDPNVRYEALLAVRNL 770
           L H  P+V   AL  + N+
Sbjct: 296 LGHSSPSVLIPALRTIGNI 314


>At3g44700.1 68416.m04807 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function; expression
           supported by MPSS
          Length = 368

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 2   PGVCR*CCVSMNTALLSSLSMVYPPYCRFWPPE 100
           P  C  CC  +   LL++L  V+  Y  + PP+
Sbjct: 336 PRTCLSCCTGLTILLLTTLQAVFAVYAYYRPPK 368


>At5g63220.1 68418.m07936 expressed protein contains Pfam PF04190:
           Protein of unknown function (DUF410)
          Length = 324

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
 Frame = +3

Query: 372 SDDEDIMNDVEYLNERLQASVQDLSSFDQYATEVKSGAWNGPRYTNGQVLARKRGSFERT 551
           SDDED+ N  E L E  ++ V++L+SF + A +  S  + GPR    ++ A         
Sbjct: 118 SDDEDVQNLQESLGE-ARSRVENLTSFLRAAIK-WSAEFGGPRTGYPELHAMLGDYLYTE 175

Query: 552 CQEL--LRTLVHLLEKSRDP 605
           C EL  +R   H + ++ DP
Sbjct: 176 CPELDMVRISRHFV-RAEDP 194


>At1g48760.2 68414.m05457 delta-adaptin, putative similar to
           SP|O14617 Adapter-related protein complex 3 delta 1
           subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 869

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 666 KHIIEQLGGKQRVMYLLSHDDPNVRYEAL 752
           KH+   L  K+ V+  +S +DPNV+ EAL
Sbjct: 326 KHLWAVLENKEVVVKAMSDEDPNVKLEAL 354


>At1g48760.1 68414.m05456 delta-adaptin, putative similar to
           SP|O14617 Adapter-related protein complex 3 delta 1
           subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 869

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 666 KHIIEQLGGKQRVMYLLSHDDPNVRYEAL 752
           KH+   L  K+ V+  +S +DPNV+ EAL
Sbjct: 326 KHLWAVLENKEVVVKAMSDEDPNVKLEAL 354


>At5g53050.2 68418.m06590 hydrolase, alpha/beta fold family protein
           contains Pfam profile PF00561: hydrolase, alpha/beta
           fold family
          Length = 396

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 3/135 (2%)
 Frame = +3

Query: 360 EQKRSDDEDIMNDVEYLNERLQASVQDLSSFDQYATEVKSGAWNGPRYTNGQVLARKRGS 539
           EQ+ + D D     +YL E +  + +    + QY   +           +GQ+ A     
Sbjct: 182 EQRAAVDLDTHYSKDYLEESVGTNTRRAILYQQYVKGISETGMQSKYGFDGQINACWLHK 241

Query: 540 FERTCQELLRT---LVHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMY 710
             +   EL+R+   LV ++    D  V+A  CY      R YP  + +++  GG     +
Sbjct: 242 ITKVEIELIRSAGFLVSVIHGRHD--VIAQICYARRLAQRLYPVAR-MVDLHGG-----H 293

Query: 711 LLSHDDPNVRYEALL 755
           L+SH+      +ALL
Sbjct: 294 LVSHERTEEVNKALL 308


>At4g14990.1 68417.m02303 expressed protein
          Length = 787

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 597 GSSPASAPGCGAVLGTFVQTSRVFAPELGRLCTGDHSR-RHSLLQ 466
           G++ A    CG  LG  VQ    +  + G L  GDHS   HSL+Q
Sbjct: 240 GNNLARYASCGPTLGNMVQQPPHWVTDPG-LLHGDHSALLHSLMQ 283


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,312,043
Number of Sequences: 28952
Number of extensions: 349558
Number of successful extensions: 1065
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)