Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00253
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    31   0.15 
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    30   0.36 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   3.3  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    26   5.8  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    26   5.8  

>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 23/77 (29%), Positives = 34/77 (44%)
 Frame = +3

Query: 420 YTMTKSYRTKWYLHTLVKCSRRVLYKSLVQTNKDGTTNNRCKHLSKTHVQDKSRKQHRPT 599
           YTM    +T    +T +  S+  +Y      N   TTN     L +   Q    +Q +PT
Sbjct: 480 YTMNGMQQTGASPNTALNISQVNMYAQNNPVNPS-TTNPFQNFLRQPSYQGMQFEQQQPT 538

Query: 600 TIPCYKNAPLLSLKLDV 650
           TIP   N P+L+ +  V
Sbjct: 539 TIPLQPNIPVLNQQYPV 555


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +3

Query: 414 PTYTMTKSYRTKWYLHTLVKCSRRVLYKSLVQTNKDGTTNNRCKHLSKTHVQDKSRKQHR 593
           P++ +  S  T   + T+ K   +V      +  K  T  +    LS  HV+ KSR  H 
Sbjct: 456 PSHVLDASSETIEVIQTIKKLQNQVPETIKDEVGKKNTAFSPGTSLSTNHVKTKSRSAHN 515

Query: 594 PTTIP 608
            +T P
Sbjct: 516 NSTSP 520


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 344  DCQTNCRVILIRSPKISIAMGSCPYLHDDKKLS 442
            D + NCR+ LI  P+   A   CP +  + K S
Sbjct: 1203 DEERNCRMQLIVKPQSFYAFSKCPIVEKNSKKS 1235


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 571 SCTCVFDKCLHLLFVVPSLLVCTNDLYNTRR 479
           S  C+ D+ +H  F+V S ++   D+Y T +
Sbjct: 195 SSICIDDQKIHPSFIVASEILTLRDMYATHK 225


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 570 DKSRKQHRPTTIPCYKNAPL 629
           D+  +QHR   + CYKN P+
Sbjct: 548 DEGVRQHREHMLKCYKNNPV 567


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,529
Number of Sequences: 5004
Number of extensions: 58484
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)