Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00253
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_59204| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_48084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)             28   8.0  
SB_50107| Best HMM Match : SpoVT_AbrB (HMM E-Value=6.1)                28   8.0  
SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)           28   8.0  
SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_34673| Best HMM Match : UK (HMM E-Value=0.6)                        28   8.0  
SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_16626| Best HMM Match : DUF1257 (HMM E-Value=3.6)                   28   8.0  

>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 481 GACCINH*CRLIKMGQRTTGASIYR-KHTCKIRVVNNIVPPRYLAIKTLRCCLSSSMFVQ 657
           GAC       ++   Q T    I   +H  K  ++N+++P +YL  KT+   L S  F+ 
Sbjct: 227 GACIPERVHTVLISTQHTPDVGIEEIRHHLKETIINHVIPEKYLDDKTIFHLLPSGQFID 286

Query: 658 PIP 666
             P
Sbjct: 287 GGP 289


>SB_59204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
 Frame = +1

Query: 43  IHYELLPPGRTVDSELYSEQLMI--LKQ*VKRK--------RPELINRRDVIFHHDNARP 192
           I +E+   GRTV+SE Y ++++   +K    RK        R    N+R ++F  D A  
Sbjct: 116 IPFEVRTQGRTVNSEYYIKRILEKEVKPLFSRKSNSENLTKRKLFSNKRSMLFVQDGAPA 175

Query: 193 HTSLAAQ 213
           HT+ A+Q
Sbjct: 176 HTAKASQ 182


>SB_48084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 323 CQVYITKDCQTNCRVILIRSPKISIAMGSC 412
           CQ+ + KDC  N + + + +  IS+A   C
Sbjct: 30  CQLTLLKDCNENFKAVFVAAKDISLADAYC 59


>SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)
          Length = 615

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 243 VNASPYSPDLAPSDFYL 293
           V  +P+SPDL P DFYL
Sbjct: 307 VEWAPHSPDLNPPDFYL 323


>SB_50107| Best HMM Match : SpoVT_AbrB (HMM E-Value=6.1)
          Length = 677

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 335 ITKDCQTNCRVILIRSPKISIAMGSC 412
           +TKD  +NC  +L+RS ++  A G C
Sbjct: 548 LTKDGHSNCFSLLVRSHRVYEAPGDC 573


>SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)
          Length = 999

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 243 VNASPYSPDLAPSDFYL 293
           V  +P+SPDL P DFYL
Sbjct: 692 VEWAPHSPDLNPPDFYL 708


>SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 474

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 243 VNASPYSPDLAPSDFYL 293
           V  +P+SPDL P DFYL
Sbjct: 83  VEWAPHSPDLNPPDFYL 99


>SB_34673| Best HMM Match : UK (HMM E-Value=0.6)
          Length = 641

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -3

Query: 607 GIVVGRCCLRLLSCTCVFDKCLHLLFVVPSLLVCTN-DLYNTRRLHLTKVCRYH 449
           G  V   CLRL   T VF  CL L    P   +C   ++  T+    T   RYH
Sbjct: 578 GTPVFSMCLRLEVGTPVFSMCLRLEVGTPVFSMCLRLEVGTTQSCVFTPRVRYH 631


>SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 243 VNASPYSPDLAPSDFYL 293
           V  +P+SPDL P DFYL
Sbjct: 83  VEWAPHSPDLNPPDFYL 99


>SB_16626| Best HMM Match : DUF1257 (HMM E-Value=3.6)
          Length = 267

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 243 VNASPYSPDLAPSDFYL 293
           V  +P+SPDL P DFYL
Sbjct: 31  VEWAPHSPDLNPPDFYL 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,080,542
Number of Sequences: 59808
Number of extensions: 460137
Number of successful extensions: 1017
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)