Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00253
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical ...    95   4e-20
U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical pr...    87   1e-17
AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical ...    84   8e-17
AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical...    82   4e-16
U42833-3|AAA83577.1|  178|Caenorhabditis elegans Sod (superoxide...    29   2.3  
Z70268-1|CAA94217.1|  390|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z81137-1|CAB03469.2|  503|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U55365-3|AAA98570.1|  127|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical
           protein Y39A3A.1 protein.
          Length = 311

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 60/154 (38%), Positives = 81/154 (52%), Gaps = 1/154 (0%)
 Frame = +1

Query: 1   KKMMPCLWWDWKGIIHYELLPPGRTVDSELYSEQLMILKQ*VKRKRPELINRRDVIFHHD 180
           KK++  +WWD  G+I  ELLP G T++++LY  QL  +    +  RP       ++  HD
Sbjct: 158 KKVLLSIWWDSMGVIFRELLPDGATINADLYCIQLEKVVHAHQLHRP---RGSKLLLLHD 214

Query: 181 NARPHTSLAAQQKLREFGWEVLMHLRIVLTLHLQIST*CRSLQNF*VVSGIHH*R-LPNQ 357
           NARPHT+L  +QKL+  G EVL H      L        RSLQN       H  + +   
Sbjct: 215 NARPHTALKTRQKLQTLGIEVLPHPPYSPDLAPTDYHLFRSLQNHLAGQKFHDRKAVETW 274

Query: 358 LPRYFDQKPQNFYSYGIMSLPTR*QKVIEQNGTY 459
           L  +F  K Q FY+ GI  LP R Q+VI+ NG Y
Sbjct: 275 LDDFFASKSQEFYAEGIAQLPLRWQEVIDTNGEY 308


>U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical
           protein R05G6.2 protein.
          Length = 339

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 1/154 (0%)
 Frame = +1

Query: 1   KKMMPCLWWDWKGIIHYELLPPGRTVDSELYSEQLMILKQ*VKRKRPELINRRDVIFHHD 180
           KK+M C+WW  +G +H+ELLP  +T+ ++ Y  QL  + +    K  +L       F HD
Sbjct: 189 KKIMICVWWGVQGPVHWELLPTNKTITADYYCAQLDRVAEKTNGKYEKL------YFLHD 242

Query: 181 NARPHTSLAAQQKLREFGWEVLMHLRIVLTLHLQIST*CRSLQNF*VVSGI-HH*RLPNQ 357
           NARPH +    QKL++ GW VL H      L         SL ++           L  +
Sbjct: 243 NARPHVAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTE 302

Query: 358 LPRYFDQKPQNFYSYGIMSLPTR*QKVIEQNGTY 459
           L  +F  +  +F+S GIM LP++ Q+V++ NG Y
Sbjct: 303 LSTFFSSRSPDFFSRGIMMLPSKWQQVVDTNGEY 336



 Score = 34.7 bits (76), Expect = 0.062
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 255 PYSPDLAPSDFYLMSVSSEFLGSVRYTSLKTAK-PIAALF*SEAPKF 392
           PYSPDLAP+D++L    S+++   ++   +  K  ++  F S +P F
Sbjct: 268 PYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELSTFFSSRSPDF 314


>AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical
           protein Y49F6A.4 protein.
          Length = 514

 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 51/152 (33%), Positives = 78/152 (51%), Gaps = 1/152 (0%)
 Frame = +1

Query: 1   KKMMPCLWWDWKGIIHYELLPPGRTVDSELYSEQLMILKQ*VKRKRPELINRRDVIFHHD 180
           KK+M C+WW  +G +H+ELLP  +T+ ++ Y  QL  + +    K  +L       F HD
Sbjct: 164 KKIMICVWWGVQGPVHWELLPTNKTITADYYCAQLDRVAEKTNGKYEKL------YFLHD 217

Query: 181 NARPHTSLAAQQKLREFGWEVLMHLRIVLTLHLQIST*CRSLQNF*VVSGI-HH*RLPNQ 357
           NARPH +    QKL++ GW VL H      L         SL ++           L  +
Sbjct: 218 NARPHVAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTE 277

Query: 358 LPRYFDQKPQNFYSYGIMSLPTR*QKVIEQNG 453
           L  +F  +  +F+S GIM LP++ Q+V++ NG
Sbjct: 278 LSTFFSSRSPDFFSRGIMMLPSKWQQVVDTNG 309



 Score = 34.7 bits (76), Expect = 0.062
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 255 PYSPDLAPSDFYLMSVSSEFLGSVRYTSLKTAK-PIAALF*SEAPKF 392
           PYSPDLAP+D++L    S+++   ++   +  K  ++  F S +P F
Sbjct: 243 PYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELSTFFSSRSPDF 289


>AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical
           protein Y45G12C.13 protein.
          Length = 384

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 1/151 (0%)
 Frame = +1

Query: 1   KKMMPCLWWDWKGIIHYELLPPGRTVDSELYSEQLMILKQ*VKRKRPELINRRDVIFHHD 180
           KK+M C+WW  +G +H+ELLP  +T+ ++ Y  QL  + +    K  +L       F HD
Sbjct: 189 KKIMICVWWGVQGPVHWELLPTNKTITADYYCAQLDRVAEKTNGKYEKL------YFLHD 242

Query: 181 NARPHTSLAAQQKLREFGWEVLMHLRIVLTLHLQIST*CRSLQNF*VVSGI-HH*RLPNQ 357
           NARPH +    QKL++ GW VL H      L         SL ++           L  +
Sbjct: 243 NARPHVAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTE 302

Query: 358 LPRYFDQKPQNFYSYGIMSLPTR*QKVIEQN 450
           L  +F  +  +F+S GIM LP++ Q+V++ N
Sbjct: 303 LSTFFSSRSPDFFSRGIMMLPSKWQQVVDTN 333



 Score = 34.7 bits (76), Expect = 0.062
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 255 PYSPDLAPSDFYLMSVSSEFLGSVRYTSLKTAK-PIAALF*SEAPKF 392
           PYSPDLAP+D++L    S+++   ++   +  K  ++  F S +P F
Sbjct: 268 PYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELSTFFSSRSPDF 314


>U42833-3|AAA83577.1|  178|Caenorhabditis elegans Sod (superoxide
           dismutase) protein5 protein.
          Length = 178

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 355 GLAVFSDVYLTLPKNSEETDIR*KSEGARSGLYG 254
           G AVF  V+LT     EET+   + +G   GL+G
Sbjct: 31  GTAVFGTVWLTQKAEGEETEFEGEIKGLSPGLHG 64


>Z70268-1|CAA94217.1|  390|Caenorhabditis elegans Hypothetical
           protein T21E8.4 protein.
          Length = 390

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 142 ELINRRDVIFHHDNARPHTSLAAQ-QKLREFGWEVLMH 252
           +L++  DV+ H  N R HT    Q + L+  G  ++MH
Sbjct: 160 QLVDGLDVLLHDPNVRGHTEFPLQIESLKRSGAFIVMH 197


>Z81137-1|CAB03469.2|  503|Caenorhabditis elegans Hypothetical
           protein W02D9.1 protein.
          Length = 503

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +2

Query: 356 NCRVILIRSPKISIAMGSCPYLHDDKKL 439
           +C  I++R+P  ++    CP+ H +K++
Sbjct: 387 SCATIILRNPPSAVDCHGCPFRHSEKQV 414


>U55365-3|AAA98570.1|  127|Caenorhabditis elegans Hypothetical
           protein C12D5.3 protein.
          Length = 127

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 492 YKSLVQTNKDGTTNNRCKHLSKTHVQDKSRKQHRPTTIPCYKNAPLLSL 638
           +K+  +  +    +  C  + KT + D +R  H   T+ CY N PL ++
Sbjct: 62  FKNAPRKQELALADGTCHRVEKTAL-DNTRSVHYADTVICYCNKPLCNM 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,167,988
Number of Sequences: 27780
Number of extensions: 334784
Number of successful extensions: 774
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)