Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00253
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...   147   1e-37
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.         119   3e-29
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.         109   3e-26
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    26   0.38 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.2  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score =  147 bits (356), Expect = 1e-37
 Identities = 76/154 (49%), Positives = 99/154 (64%), Gaps = 1/154 (0%)
 Frame = +1

Query: 1   KKMMPCLWWDWKGIIHYELLPPGRTVDSELYSEQLMILKQ*VKRKRPELINRRDVIFHHD 180
           KK++  +WWD+KGI+++ELLPP RT++S +Y EQL  L   V+ KRPEL NR+ V+FHHD
Sbjct: 186 KKVLLSVWWDYKGIVYFELLPPNRTINSVVYIEQLTKLNNAVEEKRPELTNRKGVVFHHD 245

Query: 181 NARPHTSLAAQQKLREFGWEVLMHLRIVLTLHLQIST*CRSLQNF*VVSGIHH-*RLPNQ 357
           NARPHTSL  +QKL E GW+VL H      L        RSLQN       ++   + + 
Sbjct: 246 NARPHTSLVTRQKLLELGWDVLPHPPYSPDLAPSDYFLFRSLQNSLNGKNFNNDDDIKSY 305

Query: 358 LPRYFDQKPQNFYSYGIMSLPTR*QKVIEQNGTY 459
           L ++F  K Q FY  GIM LP R QKVI+QNG +
Sbjct: 306 LIQFFANKNQKFYERGIMMLPERWQKVIDQNGQH 339


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score =  119 bits (286), Expect = 3e-29
 Identities = 50/84 (59%), Positives = 65/84 (77%)
 Frame = +1

Query: 1   KKMMPCLWWDWKGIIHYELLPPGRTVDSELYSEQLMILKQ*VKRKRPELINRRDVIFHHD 180
           KK++  +WWD+KGI+++ELL P RT++S +Y EQL  L   V+ KRPEL NR+ V+FHHD
Sbjct: 64  KKVLLSVWWDYKGIVYFELLSPNRTINSVVYIEQLTKLNNAVEEKRPELTNRKSVVFHHD 123

Query: 181 NARPHTSLAAQQKLREFGWEVLMH 252
           NARPHTSL  +QKL E GW+VL H
Sbjct: 124 NARPHTSLVTRQKLLELGWDVLPH 147


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score =  109 bits (261), Expect = 3e-26
 Identities = 46/84 (54%), Positives = 62/84 (73%)
 Frame = +1

Query: 1   KKMMPCLWWDWKGIIHYELLPPGRTVDSELYSEQLMILKQ*VKRKRPELINRRDVIFHHD 180
           KK++  +WWD KGI+++ELLPP RT++S +Y E L  L   ++ KR EL NR+ V+FHHD
Sbjct: 65  KKVLLLVWWDHKGIVYFELLPPNRTINSVVYIEHLTKLNNAIEEKRFELTNRKGVVFHHD 124

Query: 181 NARPHTSLAAQQKLREFGWEVLMH 252
           +ARPHT L  +QKL E GW+VL H
Sbjct: 125 DARPHTYLVTRQKLLELGWDVLPH 148


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +3

Query: 237 GGVNASPYSPDLAPSDFYLMSVSSEFLGSVRYTSL 341
           GG ++SP SP  +PS F+  SVS   LGS  YT +
Sbjct: 85  GGGSSSP-SPS-SPSSFF-SSVSPTSLGSENYTGI 116


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 561 HVQDKSRKQHRPTTIPCYKNAPLLSLKL 644
           +++D+++   RPTTI        LSLKL
Sbjct: 320 NIRDRNKTSARPTTIETRVTPLSLSLKL 347


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 70  CLVVTAHNE*CPSNPTT 20
           C++ T  N+ CPS P T
Sbjct: 608 CVLKTDTNQSCPSPPVT 624


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +1

Query: 19  LWWDWKGIIH 48
           LW +W G++H
Sbjct: 487 LWGEWMGVLH 496


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,704
Number of Sequences: 438
Number of extensions: 3796
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)