Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00253
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18390.1 68417.m02729 TCP family transcription factor, putati...    29   2.2  
At5g52600.1 68418.m06531 myb family transcription factor (MYB82)...    28   5.0  

>At4g18390.1 68417.m02729 TCP family transcription factor, putative
           similar to TFPD (GI:6681577) [Arabidopsis thaliana];
           teosinte branched1 protein - Zea mays, PIR2:T04347
          Length = 365

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +3

Query: 462 TLVKCSRRVLYKSLVQTNKDGTTNNRCKHLSKTHVQDKSRKQHRPTT 602
           TL   +   L KS   +N D + N+    LS++ ++DK+R++ R  T
Sbjct: 119 TLTTVAANSLSKSACSSNSDTSKNSSGLSLSRSELRDKARERARERT 165


>At5g52600.1 68418.m06531 myb family transcription factor (MYB82)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to  cDNA putative transcription factor
           (MYB82) mRNA, partial cds GI:3941515
          Length = 201

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = +3

Query: 498 SLVQTNKDGTTNNRCKHLSKTHVQDK--SRKQHRPTTI---PCYKNAPLLSLKLDVRPAH 662
           SL+     G T+N  K+   TH+  K  SR+Q+ P +I     + + P++S +L  R +H
Sbjct: 90  SLIAGRLPGRTDNEVKNYWNTHLNKKPNSRRQNAPESIVGATPFTDKPVMSTEL--RRSH 147

Query: 663 TVGPE 677
             G E
Sbjct: 148 GEGGE 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,112,396
Number of Sequences: 28952
Number of extensions: 303479
Number of successful extensions: 758
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)