Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00252
(764 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 55 1e-08
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 33 0.059
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 31 0.14
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 27 2.2
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 2.2
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 27 2.9
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 26 6.8
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.0
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 25 9.0
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.0
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 54.8 bits (126), Expect = 1e-08
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +1
Query: 4 PYCTPADNYWETDCGNFTASLAYFCTFYVIITYIVLNLLVAIIMENFSLFYSNEED-ALL 180
P C D+++ +DCGN + F + +I YI +N+ + ++ +NFS ++ L
Sbjct: 1463 PNCVNGDDFYNSDCGNKPWAYGLFIAWNIISMYIFVNMFITVVFDNFSYIHTKSSSFTNL 1522
Query: 181 SYADIRNFQNTWNIVDVHQKGVIP 252
D R F+++W D G IP
Sbjct: 1523 QRNDFRQFKDSWAPFDPMVTGYIP 1546
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 32.7 bits (71), Expect = 0.059
Identities = 14/51 (27%), Positives = 31/51 (60%)
Frame = +3
Query: 270 ILRLLKGRLECDTHKERLLFKYMCYELERLHNGEDVTFHDVINMLSYRTVD 422
++ +++ + E DTH + L Y+ Y R +GE+++ +DV+ + SY ++
Sbjct: 412 VVAIMQWKEEIDTHTNKALSTYLYYGQARDISGEELSSYDVV-LTSYNVIE 461
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 31.5 bits (68), Expect = 0.14
Identities = 12/56 (21%), Positives = 24/56 (42%)
Frame = +1
Query: 286 KVAWNATLTKSASCSNTCATSWSGSTTARTLHSMTSSICCLTELWTFESHYKWRSC 453
K+ W + SW+GS+ SM S+CC+ ++ + +++C
Sbjct: 571 KIKWRKNYLRVLIVILAILISWAGSSRLDLFVSMVGSVCCIPLIYMYPPMLHYKAC 626
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 285 KGRLECDTHKERLLFKYMCYELERLHNGEDVTFHDVI 395
K EC T K+ L+F+ + G DV +HD+I
Sbjct: 214 KALTECPTIKKVLVFQRSAEPTASMVEGRDVWWHDII 250
>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = +3
Query: 558 QQTSLIAGLRKTNEQAVDMSGEKDKEKSDTEAQQTVTATGRVEMTESASQPAMSNITSSS 737
++ +I R + ++ +EKS + + T G + + S P+ +N +SS
Sbjct: 64 EEIRIIEAKRVVERDLRSLEAKEVEEKSQFASFVSATPPGANSLQGNVSLPSGNNFFTSS 123
Query: 738 FDSQ 749
FDS+
Sbjct: 124 FDSE 127
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 552 QKQQTSLIAGLRKTNEQAVDMSGEKDKEKSDTEAQQTVTATGRV 683
+K Q S++ + +T ++ S +KD + S T TAT R+
Sbjct: 350 EKNQWSILNIVDETKRASLPYSNKKDSDSSPTALVMDFTATDRI 393
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 25.8 bits (54), Expect = 6.8
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 582 LRKTNEQAVDMSGEKDKEKSDTEAQQTVTATGRVEMTESASQPAMSNITSS 734
L T+ V SGEKD+ TE + V+ R + T S ++ S+I+S+
Sbjct: 183 LASTSSSVVVESGEKDEPVVVTEEKTMVSPPSRPDST-STTKSKTSSISSA 232
>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 263
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 246 YTGRKVKFILRLLKGRLECDTHKERLLFKYMCYELERLHNGEDVTF-HDVINMLSY 410
YTGRK K + +K L ++ + K+M + R E+V++ H + N++ +
Sbjct: 193 YTGRKTKHVPASIKSSLLEFLDEQGITVKFMKALISRSWRKENVSYKHWIHNIIGF 248
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +1
Query: 442 WRSC*RGKSLNFSLRGSSE----QNYRTWLEGCLKKI 540
WR+ RG +L+++LRG E W C+ KI
Sbjct: 369 WRAVARGCNLDYTLRGRPEVFAGMQLIEWANACVLKI 405
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +3
Query: 540 KSKQQKQQTSLIAGLRKTNEQAVDMSGEKDKEKSDTEAQQTVTATGRVEMTESASQPA 713
+S QQ + L L +N+ +D EKD+ S E ++T+ + + QP+
Sbjct: 468 ESPQQNPEEELSDSL--SNDFGIDAEKEKDENLSKPEHHPSITSVNSPFLYSPSKQPS 523
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,139
Number of Sequences: 5004
Number of extensions: 55270
Number of successful extensions: 209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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