Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00252
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0253 - 27901204-27901251,27901673-27901744,27901944-279020... 36 0.047
03_01_0180 + 1456182-1456359,1456444-1456520,1456570-1456692,145... 29 4.1
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 29 4.1
11_07_0010 - 27334177-27334337,27334479-27334560 29 5.4
09_02_0271 + 6540287-6540368,6540510-6540670 29 5.4
02_01_0747 - 5561298-5562005,5563080-5563185,5563759-5563775 29 5.4
04_03_0174 + 12263843-12265126 28 7.1
01_06_1664 - 38984545-38984615,38984706-38984802,38985362-389855... 28 7.1
01_06_0316 - 28419072-28419373,28419405-28420502,28420600-28420819 28 7.1
>01_06_0253 -
27901204-27901251,27901673-27901744,27901944-27902030,
27902484-27902574,27903706-27903769,27904354-27904461,
27905124-27905181,27905813-27905956,27906307-27906372,
27907227-27907299,27908439-27908500,27908923-27909000,
27909124-27909229,27909317-27909483,27909961-27910048,
27911204-27911313,27911833-27911928,27912354-27912461,
27912568-27912711,27913850-27914065
Length = 661
Score = 35.5 bits (78), Expect = 0.047
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 61 SLAYFCTFYVIITYIVLNLLVAIIMENFSLFYSNEED 171
SL YF +FY+I ++LNL+VA ++E F E+D
Sbjct: 604 SLIYFVSFYLISVLLLLNLIVAFVLEAFFAEMELEKD 640
>03_01_0180 +
1456182-1456359,1456444-1456520,1456570-1456692,
1456783-1456896,1457580-1457666,1458040-1458179,
1458253-1458340,1459125-1459198,1461147-1461340,
1461430-1461632,1461955-1462001,1462084-1462336,
1462551-1462568
Length = 531
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 606 VDMSGEKDKEKSDTEAQQTVTATGRVEMTESASQPAMSNITSS 734
VDM G + + + +T TG +EMT+ ++ AM+ I+ +
Sbjct: 187 VDMHGNEAGKGGELTHDETTIITGALEMTQKTAKDAMTPISET 229
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 546 KQQKQQTSLIAGLRKTNEQAVDMSGEKDKEKSDTEAQQTVTATGRVEMTESASQ 707
++ Q+ +L+A + Q ++ E+ D E ++ T VEMTES+ Q
Sbjct: 1144 EETAQEANLLASEPTDDVQVKELEPEEISNTVDGETEEASCQTHEVEMTESSEQ 1197
>11_07_0010 - 27334177-27334337,27334479-27334560
Length = 80
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 313 KSASCSNTCATSWSGSTTARTLHSMTSSICC 405
K +C+N C T TAR +H+ CC
Sbjct: 40 KIVACTNKCRTHHHPKYTARCIHNTNPEQCC 70
>09_02_0271 + 6540287-6540368,6540510-6540670
Length = 80
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 313 KSASCSNTCATSWSGSTTARTLHSMTSSICC 405
K +C+N C T TAR +H+ CC
Sbjct: 40 KIVACTNKCRTHHHPKYTARCIHNTNPEQCC 70
>02_01_0747 - 5561298-5562005,5563080-5563185,5563759-5563775
Length = 276
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 745 ESNDEDVIFDIAG*EADSVISTRPVAVTV 659
ES +DV D+AG E D+V++ R A+ V
Sbjct: 108 ESKLQDVAVDVAGSEVDAVVTVREEAMAV 136
>04_03_0174 + 12263843-12265126
Length = 427
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +3
Query: 582 LRKTNEQAVDMSGEKDKEKSDTEAQQTVTATGRVEMTESASQPAMSNITSSS 737
L + +E D G D + + VTAT V M SAS PA++ +SSS
Sbjct: 310 LVEEDEDDDDNDGNTDTAAATQTSTSRVTAT--VGMRRSASSPALATTSSSS 359
>01_06_1664 -
38984545-38984615,38984706-38984802,38985362-38985523,
38985736-38985825,38986125-38986226,38986373-38986446,
38986587-38986615,38986766-38986989
Length = 282
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 340 ATSWSGSTTARTLHSMTSSICCLTE-LWTFESHYKW 444
A W G+ A T H + CC +E L TF H W
Sbjct: 53 ALQWPGTICASTRHCCAINGCCRSEPLQTFTIHGLW 88
>01_06_0316 - 28419072-28419373,28419405-28420502,28420600-28420819
Length = 539
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 252 GRKVKFILRLLKGRLECDTHKERLLF-KYMCYELERLHNGED 374
GR + ILRL R C+ K L + ELERLH+G D
Sbjct: 259 GRNARAILRL---RAACEQAKRTLSSASWAAIELERLHDGAD 297
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,013,190
Number of Sequences: 37544
Number of extensions: 357609
Number of successful extensions: 987
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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