Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00252
(764 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 5e-11
SB_28322| Best HMM Match : Ion_trans (HMM E-Value=1.6e-41) 55 7e-08
SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0) 52 7e-07
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0) 47 2e-05
SB_5722| Best HMM Match : Ion_trans (HMM E-Value=0) 46 3e-05
SB_41346| Best HMM Match : Ion_trans (HMM E-Value=0) 44 1e-04
SB_51476| Best HMM Match : Ion_trans (HMM E-Value=6.29996e-41) 42 7e-04
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0) 40 0.002
SB_3393| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=0.012) 34 0.14
SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0) 31 0.77
SB_46461| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24) 31 1.3
SB_37173| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 30 1.8
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 30 2.3
SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1) 29 3.1
SB_57479| Best HMM Match : PKD_channel (HMM E-Value=0) 29 3.1
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_21492| Best HMM Match : Ion_trans (HMM E-Value=1.3e-05) 29 3.1
SB_23290| Best HMM Match : SRCR (HMM E-Value=0) 29 4.1
SB_3121| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_29556| Best HMM Match : Ion_trans (HMM E-Value=0) 28 7.2
SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_12327| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1867
Score = 65.3 bits (152), Expect = 5e-11
Identities = 35/70 (50%), Positives = 47/70 (67%)
Frame = +1
Query: 46 GNFTASLAYFCTFYVIITYIVLNLLVAIIMENFSLFYSNEEDALLSYADIRNFQNTWNIV 225
GN A L VII + L L A+I+ENFSLFY+++ED+LLS D+R+FQ WN+V
Sbjct: 1232 GNENAYLISTIFGVVIIIFRFLTLS-AVIIENFSLFYASDEDSLLSNTDLRDFQMAWNLV 1290
Query: 226 DVHQKGVIPV 255
D +KGV+ V
Sbjct: 1291 DKGRKGVMSV 1300
Score = 65.3 bits (152), Expect = 5e-11
Identities = 41/159 (25%), Positives = 80/159 (50%), Gaps = 1/159 (0%)
Frame = +3
Query: 282 LKGRLECDTHKERLLFKYMCYELERLHNGEDVTFHDVINMLSYRTVDIRKSLQMXXXXXX 461
LKGRL+ D + F++MC E+E+L NG DV+FHDV+ +++YR+VDI +SLQ+
Sbjct: 1319 LKGRLDMDNRT--VPFRHMCCEIEKLRNGGDVSFHDVLGIIAYRSVDISRSLQLEELLER 1376
Query: 462 XXXXXXXXXK*RTE-LSDLVRRLP*ENKSKQQKQQTSLIAGLRKTNEQAVDMSGEKDKEK 638
+ + + D +L + + ++Q+++ G + + + +E
Sbjct: 1377 EELEYTIEQEVAIQTIRDWFMKLRLKREFEKQQREKRNSQGASSNDSYSGATEDTEQQEH 1436
Query: 639 SDTEAQQTVTATGRVEMTESASQPAMSNITSSSFDSQPS 755
+ E + ++G E + ++ + N TS+ + PS
Sbjct: 1437 REHEGEH--LSSGDEEEKDKEAEQSSQNCTSAGLLTAPS 1473
>SB_28322| Best HMM Match : Ion_trans (HMM E-Value=1.6e-41)
Length = 263
Score = 54.8 bits (126), Expect = 7e-08
Identities = 24/62 (38%), Positives = 37/62 (59%)
Frame = +1
Query: 43 CGNFTASLAYFCTFYVIITYIVLNLLVAIIMENFSLFYSNEEDALLSYADIRNFQNTWNI 222
CGN AS+ YF TFY ++++LNL VA+IM+NF Y ++++L + F W+
Sbjct: 200 CGNTAASIIYFITFYFFCSFLMLNLFVAVIMDNFE--YLTRDESILGPHHLDEFVRVWSE 257
Query: 223 VD 228
D
Sbjct: 258 YD 259
>SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1885
Score = 51.6 bits (118), Expect = 7e-07
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +1
Query: 10 CTPADNYWETD--CGNFTASLAYFCTFYVIITYIVLNLLVAIIMENFSLFYSNEEDALLS 183
C P +TD CG A AYFC+FY I +++++NL VA+IM+NF Y + ++L
Sbjct: 1431 CDPNAYPQDTDGLCGTDFA-YAYFCSFYAICSFLIINLFVAVIMDNFD--YLTRDWSILG 1487
Query: 184 YADIRNFQNTWNIVDVHQKGVI 249
+ F W+ D G +
Sbjct: 1488 PHHLDEFVRVWSEYDPEASGCV 1509
>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1283
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = +1
Query: 1 PPYCTPA-DNYWETDCGNFTASLAYFCTFYVIITYIVLNLLVAIIMENFSLFYSNEEDAL 177
PP C P + DCG + YF +F ++ I++N+ +AII+EN S + EE +
Sbjct: 760 PPDCDPTYEGLPNGDCGTPWLAHIYFTSFILLTFLIIINMYIAIILENLSQAHQQEEVGI 819
Query: 178 LSYADIRNFQNTWNIVDVHQKGVIPVGR*SSY 273
D+ F W + D IP S +
Sbjct: 820 TD-DDLDMFYMQWELFDPGATQYIPYSALSEF 850
Score = 35.1 bits (77), Expect = 0.062
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 49 NFTASLAYFCTFYVIITYIVLNLLVAIIMENFSLFYSNEED 171
NF A+ AYF F ++ ++ LNL + +I++NF+ ED
Sbjct: 441 NF-AAYAYFVVFIIVGSFFTLNLFIGVIIDNFNRLKKQYED 480
>SB_5722| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1236
Score = 46.4 bits (105), Expect = 3e-05
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Frame = +1
Query: 4 PYC----TPADNYWETDCGNFTASLAYFCTFYVIITYIVLNLLVAIIMENFSLFYSNEED 171
PYC TP +CG ++ YF ++ ++I I++N+ +A+I+ENF+ S EE
Sbjct: 921 PYCDPKMTPPGEGMGGNCGKPLLAVFYFVSYILLIFLIIVNMYIAVILENFNEAQSQEEI 980
Query: 172 ALLSYADIRNFQNTWNIVD 228
+ D+ F TW D
Sbjct: 981 GITD-DDLETFILTWEKYD 998
>SB_41346| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1264
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/71 (30%), Positives = 38/71 (53%)
Frame = +1
Query: 40 DCGNFTASLAYFCTFYVIITYIVLNLLVAIIMENFSLFYSNEEDALLSYADIRNFQNTWN 219
+CGN + Y +F VII I++N+ +A+I+EN++ E+ + + DI F W
Sbjct: 905 NCGNKYMAPIYLGSFVVIIFLILINMYIAVILENYNQVMEQEKIGITN-EDIELFYQMWE 963
Query: 220 IVDVHQKGVIP 252
+ D + IP
Sbjct: 964 LFDPNATQYIP 974
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 49 NFTASLAYFCTFYVIITYIVLNLLVAIIMENFS 147
N ++ +F F ++ T+ LNL + +I++NF+
Sbjct: 666 NNVSAYLFFVVFIILGTFFTLNLFIGVIIDNFN 698
>SB_51476| Best HMM Match : Ion_trans (HMM E-Value=6.29996e-41)
Length = 823
Score = 41.5 bits (93), Expect = 7e-04
Identities = 27/78 (34%), Positives = 42/78 (53%)
Frame = +1
Query: 16 PADNYWETDCGNFTASLAYFCTFYVIITYIVLNLLVAIIMENFSLFYSNEEDALLSYADI 195
PAD ET CG+ A + YF +F ++++LNL VA+IM+NF Y ++++L +
Sbjct: 393 PAD---ET-CGSNVAYV-YFVSFIFFCSFLLLNLFVAVIMDNFE--YLTRDESILGPHHL 445
Query: 196 RNFQNTWNIVDVHQKGVI 249
F W+ D G I
Sbjct: 446 DEFVRVWSEYDPGATGRI 463
>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 2675
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Frame = +1
Query: 1 PPYCTP---ADNYWETDCGNFTASLAYFCTFYVIITYIVLNLLVAIIMENFSLFYSNEED 171
PP C P ++ DCG + Y ++ +I+ I++N+ +A+I+EN + +
Sbjct: 2559 PPECDPYFGGEDLPNGDCGFPLGAPLYLVSYIIIVFLIIVNMYIAVILENVNR-AQESGN 2617
Query: 172 ALLSYADIRNFQNTWNIVDVHQKGVIPVGR*SSY 273
+ D + WN V K IP+ + S++
Sbjct: 2618 FIFKKEDFDAYFKKWNEYAVGGKQYIPIHKLSAF 2651
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +1
Query: 37 TDCGNFTASLAYFCTFYVIITYIVLNLLVAIIMENFS 147
+D NF+ + +F F +I + VLNL V +I++NF+
Sbjct: 2300 SDESNFSGYI-FFVIFILIGAFFVLNLFVGVIIDNFN 2335
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 40 DCGNFT--ASLAYFCTFYVIITYIVLNLLVAIIMENFSLFYSNEED 171
DC T ++ +F +VI +IVLNL +A+++ F +++D
Sbjct: 1766 DCMKATNPGAILFFIPAFVIGNFIVLNLFLALLLNAFDSDDDDDDD 1811
>SB_3393| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=0.012)
Length = 626
Score = 33.9 bits (74), Expect = 0.14
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 67 AYFCTFYVIITYIVLNLLVAIIMENFSLFYSNEED 171
AYF F ++ ++ VLNL V +I++NF+ E+
Sbjct: 68 AYFVVFIIVGSFFVLNLFVGVIIDNFNTLKKKYEE 102
>SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1457
Score = 31.5 bits (68), Expect = 0.77
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +1
Query: 64 LAYFCTFYVIITYIVLNLLVAIIMENF 144
L YF F ++ ++VLN++V +++ENF
Sbjct: 1211 LVYFIPFLLLGGFLVLNMIVGVVVENF 1237
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 70 YFCTFYVIITYIVLNLLVAIIMENFS 147
YF + Y++ NLLVAI++E F+
Sbjct: 653 YFIALMTVGYYVLFNLLVAILVEGFT 678
>SB_46461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 817
Score = 31.5 bits (68), Expect = 0.77
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +3
Query: 534 ENKSKQQKQQTSLIAGLRKTNEQAVDMSGEKDK-EKSDTEAQQTVTATGRVEMTESASQP 710
E++SK+ K++ +IA + +V+ E K E D + + A+GR + +
Sbjct: 81 EHESKRLKEEKFMIAAKINNSLNSVNREVEHLKAELQDQDKRLAELASGRERVPHRSEST 140
Query: 711 AMSNITSSSFDS 746
+ SN+ S+ FDS
Sbjct: 141 SCSNLPSTVFDS 152
>SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24)
Length = 1669
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +3
Query: 534 ENKSKQQKQQTSLIAGLRKTNEQAVDMSGEKDK---EKSDTEAQQTVTATGRVEMTESAS 704
+NKSK +K Q+ + G T+E + ++DK ++ ++ T A G ++ +
Sbjct: 936 QNKSKTRKAQSDKVFGQSSTDEDVSSSTSKEDKSVLKRGRQSSKGTTDAGGSGGSSQEDT 995
Query: 705 QPAMSNITSSSFDSQPSKR 761
+ +SN+ + + KR
Sbjct: 996 ETDVSNVNGNGRKRKTRKR 1014
>SB_37173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 22 DNYWETDCGNFTASLAYFCTFYVIITYIVLNLLVAIIMENF 144
D+Y + ++ + YF +Y++ +++NL VA+I+E F
Sbjct: 35 DDYHDHIAYHYRWAQLYFLAWYLVSVIMIINLFVALILEAF 75
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 534 ENKSKQQKQQTSLIAGLRKTNEQAVDMSGEKDKEKSDTEAQQTVTAT--GRVEMTESASQ 707
+ ++K+Q+Q+ + L++ + EK KEK + + T + G E TE + Q
Sbjct: 1500 DEETKRQRQKEAAANALQEYEAMMKAAADEKSKEKKKRKKEDEATRSDDGTDEKTEDSMQ 1559
Query: 708 PAMSNITSSSFDSQPSK 758
++ SS+ S +K
Sbjct: 1560 EDAKDLDSSNTASDTTK 1576
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 615 SGEKDKEKSDTEAQQTVTATGRVEMTESASQPAMS 719
SG++D K+D + +T + T VE ++A PAM+
Sbjct: 873 SGDEDDTKADAQRSETNSPTLDVETQQTADNPAMT 907
>SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1)
Length = 566
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/89 (23%), Positives = 40/89 (44%)
Frame = +3
Query: 495 RTELSDLVRRLP*ENKSKQQKQQTSLIAGLRKTNEQAVDMSGEKDKEKSDTEAQQTVTAT 674
+T+ S + + K+KQ++ + + RKT++ EKDK+ D +A A
Sbjct: 248 KTKTSRKTKTSKPQEKNKQEQDKQAARQASRKTSKTKTSKPQEKDKQDEDKQA-----AR 302
Query: 675 GRVEMTESASQPAMSNITSSSFDSQPSKR 761
R T AS+ ++ +S + K+
Sbjct: 303 KRQVRTRQASRKKKTSTNKTSKPQEKDKK 331
>SB_57479| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 939
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +1
Query: 10 CTPADNYWETDCGNFTASLAYFCTFYVIITYIVLNLLVAIIMENFSLFYSNEEDALLSY 186
C +Y E + N YF +F I ++N+ +AII ++FS ++ +D Y
Sbjct: 754 CLGDFDYLEMEEENRMLGRIYFFSFMYFIVMYLMNMFLAIINDSFSEVKTSNDDLKNEY 812
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 29.5 bits (63), Expect = 3.1
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 14/93 (15%)
Frame = +3
Query: 519 RRLP*ENKSKQQKQQTSLIAGLRKTNEQAVDMS-GEKDKEKSDTEA-------------Q 656
R+L + + QQ+Q+T ++ K +QA + GE+ K+KS +A +
Sbjct: 1743 RQLEHQRQQLQQQQETHMMRQELKRTQQAKGLRMGEEKKKKSPQKAGKKFSSGPSFGDKE 1802
Query: 657 QTVTATGRVEMTESASQPAMSNITSSSFDSQPS 755
+ ++ + +E A QP+ + TSSS DS S
Sbjct: 1803 EELSGSSMDHHSEGAMQPSPAVSTSSSLDSHLS 1835
>SB_21492| Best HMM Match : Ion_trans (HMM E-Value=1.3e-05)
Length = 1130
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 52 FTASLAYFCTFYVIITYIVLNLLVAIIMENFSLFYSNEED 171
F + Y F+ I+ IVLNL+ +I++ F+ S +++
Sbjct: 971 FAGRVVYDLMFFFIVIIIVLNLIFGVIIDTFADLRSEKQN 1010
>SB_23290| Best HMM Match : SRCR (HMM E-Value=0)
Length = 478
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 615 SGEKDKEKSDTEAQQTVTATGRVEMTESASQPAMSNITSSSFDSQPSK 758
S EK ++K D A R E T ++ A +I S+ FD QPS+
Sbjct: 386 SPEKSEDKEDHTLGMREIAAQR-EQTNQENRCAQQSIQSNRFDQQPSR 432
>SB_3121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 129 DGHKQVEHDVRDDDVESAEVSERRGEVPAVR 37
D K+V+ D DDD+E+ + + EVP ++
Sbjct: 42 DTEKEVDEDDDDDDLETEQDENKENEVPKLK 72
>SB_29556| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 712
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 70 YFCTFYVIITYIVLNLLVAIIMENFS 147
YF + Y++ NLLVAI++E F+
Sbjct: 396 YFIALMTVGYYVLFNLLVAILVEGFT 421
>SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 295 WNATLTKSASCSNTCATSWSGSTTARTLHSMTSSICCLT 411
+ +T T++ + SNTCA + S ++T+ + TS+ C T
Sbjct: 231 YTSTNTRANTSSNTCADTRSNTSTSSYTGTNTSASYCRT 269
>SB_12327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +1
Query: 313 KSASCSNTCATSWSGSTTARTLHSMTSSICCLTEL 417
KSA C C W ST LH+ C L +
Sbjct: 12 KSAMCCKVCEKRWKNSTYLPCLHTEACIECALKSM 46
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,767,386
Number of Sequences: 59808
Number of extensions: 413573
Number of successful extensions: 1902
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1900
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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