Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00252
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   5.4  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   7.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.5  

>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/47 (25%), Positives = 18/47 (38%)
 Frame = +1

Query: 331 NTCATSWSGSTTARTLHSMTSSICCLTELWTFESHYKWRSC*RGKSL 471
           N     W G  + R L  M + +  L  L  +     WR   R +S+
Sbjct: 5   NRDGEKWKGKMSQRPLARMLALLVSLHRLSIYSGGSDWRVAGRSESV 51


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 105 DVRDDDVESAEVSERRGEVPA 43
           D RDDD E+ E  + RG+  A
Sbjct: 278 DDRDDDEENEEEEDGRGQSEA 298


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -1

Query: 269 ELHL--PTGITPFWCTSTMFQVF*KFLISAYDSRASSSLE*NNEKFSIMMATSK 114
           ELH+  PT I+    +    ++   FLI+  DS+ S+ +E N +  + +++  K
Sbjct: 332 ELHVDAPTWISSVTESVLKSKIGQVFLITILDSKVSARIEMNEDDNTSLVSLDK 385


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 316 SASCSNTCATSWSGSTTARTLHSMTSSICCLTELWTFES 432
           S +CSN+ +   SGS+ +R  +   SS  C     TF S
Sbjct: 18  SNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGS 56


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 316 SASCSNTCATSWSGSTTARTLHSMTSSICCLTELWTFES 432
           S +CSN+ +   SGS+ +R  +   SS  C     TF S
Sbjct: 18  SNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGS 56


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +3

Query: 582 LRKTNEQAVDMSGEKDKEKSDTEAQQTVTATGRVEMTESASQPAMSNITSSSFDSQPS 755
           +RK   Q VD +  +DK  +  +  + V    +  +T+     A SN TS    S  S
Sbjct: 94  IRKIIRQCVDNAKNEDKCLTAQKFSRCVIDYVKFHITQYMISNANSNTTSEEESSDNS 151


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -2

Query: 646 VSDFSLSFSPLISTACSFVLRSP 578
           + DFS  FSP I     F  R P
Sbjct: 235 LQDFSKRFSPAIRGVVEFAKRIP 257


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 46  GNFTASLAYFCTFYVIITYIVLNLLVAIIM 135
           G F A       F++I+  I++ L+  IIM
Sbjct: 255 GQFGAQGKLIVDFFMILNEIIMKLVGIIIM 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,052
Number of Sequences: 438
Number of extensions: 3686
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)