Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00252
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03560.1 68417.m00488 two-pore calcium channel (TPC1) identic...    36   0.022
At2g31480.1 68415.m03845 expressed protein contains Pfam profile...    33   0.28 
At5g16030.1 68418.m01874 expressed protein                             29   2.6  
At4g18070.1 68417.m02688 expressed protein                             29   2.6  
At3g28790.1 68416.m03593 expressed protein                             29   3.4  
At2g42770.1 68415.m05296 peroxisomal membrane 22 kDa family prot...    28   7.8  

>At4g03560.1 68417.m00488 two-pore calcium channel (TPC1) identical
           to two-pore calcium channel (TPC1) [Arabidopsis
           thaliana] gi|14041819|dbj|BAB55460
          Length = 733

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +1

Query: 61  SLAYFCTFYVIITYIVLNLLVAIIMENFSLFYSNEEDALLSYADIRNFQN 210
           S+ YF +FYVI   ++LNL+VA ++E F      EE+      D +  +N
Sbjct: 648 SITYFVSFYVITILLLLNLVVAFVLEAFFTELDLEEEEKCQGQDSQEKRN 697


>At2g31480.1 68415.m03845 expressed protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 472

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 22/138 (15%)
 Frame = +1

Query: 286 KVAWNATLT-KSASCSNTCATSWSGSTTARTLHSMTSSICCLTELWTFESHYKW------ 444
           KV+++   T KS S  N+ AT+ S    +  +    S I      W FE  + W      
Sbjct: 229 KVSFSVAKTEKSPSPDNSTATATSSLKKSAEIGVTKSKIVVEPLFWPFEQKFDWTPEDIL 288

Query: 445 ----RSC*RGKSLNFSLRGSSEQNYRTWL--------EGCLKKIRAN--SRNSKPVLLLD 582
                S  R KSL   + G+S ++ R  L        EGC +K+  N    NSKP  + +
Sbjct: 289 KHFSMSPRRKKSLGSKIAGTSPRSMRAQLQTRKLDLKEGCKRKLMFNGPGSNSKPTRIPE 348

Query: 583 CVRQ-TNKPSI*AAKKTK 633
             R  +N  +  + KKT+
Sbjct: 349 LNRTISNSSNNSSMKKTE 366


>At5g16030.1 68418.m01874 expressed protein
          Length = 339

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 534 ENKSKQQKQQTSLIAGLRKTNEQAVDMSGEKDKEKSDTEAQQTVT 668
           E + +++KQ  S      +  E+  DMS E DKE+ D + ++  T
Sbjct: 257 EKEKEEEKQDMSNEEDEEEEEEEKQDMSEEDDKEEEDEQEEEEKT 301


>At4g18070.1 68417.m02688 expressed protein
          Length = 262

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = +3

Query: 534 ENKSKQQKQQTSLIAGLRKTNEQAVDMSGEKDKEKSDTEAQQTVTATGRVEMTESASQPA 713
           + + +QQ+Q +S +  L+  N    D   + DKE  D   ++        +  +S+S  +
Sbjct: 14  KQEEEQQQQGSSTLINLKSNNH---DSRSQGDKESDDGVNERIEITDSSHDHDKSSSSSS 70

Query: 714 MSNITSSSFDSQPSKR 761
            S+ +SSS  S    R
Sbjct: 71  SSSSSSSSSSSDDESR 86


>At3g28790.1 68416.m03593 expressed protein 
          Length = 608

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
 Frame = +3

Query: 543 SKQQKQQTSLIAGLRKTNEQAVDMSGEKDKEKSDTEAQQTVT-----ATGRVEMTESASQ 707
           S QQ+   SL   L+  N Q V  SG+       TE +QT+T      T  VE   S+S 
Sbjct: 529 SCQQEVMQSL-KELQDINSQIV--SGKTVTSTQQTELKQTITKWEQVTTQFVETAASSSS 585

Query: 708 PAMSNITSSSFDSQPSKR 761
            + S+ +SSS  SQ S +
Sbjct: 586 SSSSSSSSSSSSSQGSAK 603


>At2g42770.1 68415.m05296 peroxisomal membrane 22 kDa family protein
           contains Mpv17 / PMP22 family domain, Pfam:PF04117
          Length = 232

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/74 (29%), Positives = 29/74 (39%)
 Frame = +1

Query: 352 SGSTTARTLHSMTSSICCLTELWTFESHYKWRSC*RGKSLNFSLRGSSEQNYRTWLEGCL 531
           SG    RT    +SS     ELW   S + W    R  S  F L G     +  +L+  L
Sbjct: 76  SGRWKKRTALKQSSSELDEGELWNIFSEHDWIRALRMSSYGFLLYGPGSYAWYQFLDHSL 135

Query: 532 KKIRANSRNSKPVL 573
            K  A +   K +L
Sbjct: 136 PKPTATNLVLKVLL 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,425,687
Number of Sequences: 28952
Number of extensions: 284884
Number of successful extensions: 873
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)