Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00251
         (317 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    27   0.91 
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   2.8  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   2.8  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    25   3.7  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    24   4.8  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    24   4.8  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    24   6.4  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    23   8.5  
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    23   8.5  

>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 0.91
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 155 ICHKDNDPQENVINERTHLLEVTD-QQQETLVP 250
           +CH+D  PQ  +++ +T +L++ D    + LVP
Sbjct: 146 VCHRDIKPQNLLVDYKTGILKLCDFGSAKVLVP 178


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +2

Query: 203 THLLEVTDQQQETL---VPVDQRPHHRGNQTNR 292
           THLL+ TDQ  E L   V + Q   H GN + +
Sbjct: 795 THLLKQTDQYLENLTRAVRIQQSNIHSGNTSGK 827


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 117 LKHECNEVSSSSDCINVLYRDL 52
           L H+CN   S + CI+ +Y+ L
Sbjct: 362 LGHKCNSCHSYNTCISSIYKPL 383


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +2

Query: 188 VINERTHLLEVTDQQQETLVPVD----QRPHH 271
           V NE  H+L++T++     VP D    Q PHH
Sbjct: 211 VENECIHILKLTEKYSSQNVPFDVYAAQIPHH 242


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 105 CNEVSSSSDCINVLYRDLLAWIKIENIVGMPLT 7
           CN  SS  +   VLY   L   +I N++ + +T
Sbjct: 354 CNTKSSHPETAQVLYNSFLVDNRINNLLDLLIT 386


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +2

Query: 152 SICHKDNDPQENVINERTHLLEVTD 226
           ++ H D  P   ++NE+ ++L++ D
Sbjct: 281 NVIHSDIKPDNMLVNEKRNILKICD 305


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 147 QQPITAVFKELKHECNEVSSSSDCINVLYRDLLAWIKIE 31
           Q+ IT VF+    E   VSSS D I  + R L   I+++
Sbjct: 140 QKGITVVFRNDPLESVRVSSSFDSIPAIARFLQREIEVQ 178


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 81  DCINVLYRDLLAWIKIENIVGMPL 10
           DC++V Y +L AW  ++N+  M +
Sbjct: 566 DCVSVSYGELKAW--LDNVYEMEI 587


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 155 ICHKDNDPQENVINERTHLLEVTD 226
           ICH+D  PQ  +++    +L++ D
Sbjct: 153 ICHRDIKPQNLLLDPENGILKLCD 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,276,219
Number of Sequences: 5004
Number of extensions: 22315
Number of successful extensions: 80
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)