Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00251
         (317 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54308| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.050
SB_50684| Best HMM Match : Toxin_trans (HMM E-Value=4.8)               29   1.1  
SB_24034| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_43422| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.4  
SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.4  
SB_28001| Best HMM Match : Zip (HMM E-Value=3e-18)                     27   4.4  
SB_37671| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.8  
SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)                   26   5.8  
SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.6  

>SB_54308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 33.1 bits (72), Expect = 0.050
 Identities = 18/32 (56%), Positives = 19/32 (59%)
 Frame = +1

Query: 220 NGPATGDAGTCGSASTPPRKPDEQTALNRILH 315
           N    GD G   SA TP  K DEQ+ LNRILH
Sbjct: 20  NNQRAGDDGITTSA-TPISKTDEQSMLNRILH 50


>SB_50684| Best HMM Match : Toxin_trans (HMM E-Value=4.8)
          Length = 346

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = -3

Query: 144 QPITAVFKELKHECNEVSSSSDCINVLYRDLLAWI 40
           +P+TAV + +K    EVSS S+ ++ + RD+ +++
Sbjct: 170 EPVTAVLENIKKMVEEVSSRSEEMSEVARDIQSFL 204


>SB_24034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = -3

Query: 144 QPITAVFKELKHECNEVSSSSDCINVLYRDLLAWI 40
           +P+TAV + +K    EVSS S+ ++ + RD+ +++
Sbjct: 12  EPVTAVLENIKKMVEEVSSRSEEMSEVARDIQSFL 46


>SB_43422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
 Frame = +1

Query: 22  YDIFYFYPR*EITIQNIYAVRRRGYFVAFMLQLFKNSRNGXXXXXXPQRQRPTGERYKRK 201
           ++I Y+      TI NI     +    A + Q    + +       P  ++PT   +   
Sbjct: 471 FNITYWPTNDPNTITNISITPEQALGTATVTQEHNITTSSEAPTTRPSSEKPTTRPFSET 530

Query: 202 DTSTRSNGPA---TGDAGTCGSASTPPRKPDEQT 294
            TST S  P         T  S+ TP  +P  +T
Sbjct: 531 PTSTSSETPTKTFNKTPATRPSSETPTTRPSSET 564


>SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 146 CYSICHKDNDPQENVINERTHLLEVTD 226
           C  ICH+D  PQ  +++  T +L++ D
Sbjct: 180 CLGICHRDIKPQNLLLDPETAVLKLCD 206


>SB_28001| Best HMM Match : Zip (HMM E-Value=3e-18)
          Length = 656

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 86  DEDTSLHSCFNSLKTAVMGCCYSICHKDNDPQENVINERTHLLEVTDQQQ 235
           DE    H+C + +     G C    H D+D  +N+ +++  L E+   +Q
Sbjct: 198 DEHDFEHACASIVSHLYQGYCIGESHHDHDHAKNLPDKKFFLDELYKNKQ 247


>SB_37671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 52  EITIQNIYAVRRRGYFVAFMLQL 120
           EIT+QN+Y +R+  Y  AF L L
Sbjct: 51  EITMQNLYWLRQNPYSNAFNLSL 73


>SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)
          Length = 361

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +1

Query: 172 RPTGERYKRKDTSTRSNGPATGDAGTCGSASTPPRKPDEQTALNRI 309
           RPT    K    ST+   P +  A T  +A  P  KP    A + I
Sbjct: 33  RPTSTSTKPTTASTKPTSPPSQAARTRNTAEKPEEKPASSGAASPI 78


>SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 134 VMGCCYSICHKDNDPQENVINERTHLLEVTDQQQETLVPVDQRPHHRGN 280
           V   C S+CHKD      +  +  H + +T    E LV V+  PHH G+
Sbjct: 384 VQKTCISLCHKD------ITLDYLHTVMLT-LLAEGLVAVELCPHHVGH 425


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,823,843
Number of Sequences: 59808
Number of extensions: 176341
Number of successful extensions: 599
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)