Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00251
         (317 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   2.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   2.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   2.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   2.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.7  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    20   6.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    20   6.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   8.3  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 8/25 (32%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 105 CNEVSSSSDCINVLYRDLLA-WIKI 34
           CN   ++ +C+N   RD L+ W+++
Sbjct: 101 CNNYWNTKNCVNPYDRDSLSCWLQM 125


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 203 THLLEVTDQQQETLVPVDQRPHH 271
           THL++++   +   +P+ Q  HH
Sbjct: 53  THLMDLSSPPEHRDLPIYQSHHH 75


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = +1

Query: 160 PQRQRPTGERYKRKDTSTRSNGPATGDAGTCGSASTPPRKPD 285
           P +  P  + Y+    S +   PAT     C   +TP  K +
Sbjct: 255 PIKSEPI-DAYEMHQISKKKLSPATPKGSKCSMITTPEIKKE 295


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +1

Query: 163 QRQRPTGERYKRKDTSTRSNGPATGD 240
           Q+Q+P  ++ +++    +  GP T D
Sbjct: 837 QQQQPQQQQQQQQQQQQQQRGPMTND 862


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 83   DDEDTSLHSCFNSLKTAVMGCCYSICHKD 169
            +DED  LHS    L+    G    + H+D
Sbjct: 1075 NDEDFVLHSLAVELEHGAAGLRLCLHHRD 1103


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/30 (23%), Positives = 16/30 (53%)
 Frame = -3

Query: 132 AVFKELKHECNEVSSSSDCINVLYRDLLAW 43
           +V  EL+H     +   DC+ +L+  ++ +
Sbjct: 391 SVANELRHSRPVPAKKYDCVTLLFSGIVGF 420


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/30 (23%), Positives = 16/30 (53%)
 Frame = -3

Query: 132 AVFKELKHECNEVSSSSDCINVLYRDLLAW 43
           +V  EL+H     +   DC+ +L+  ++ +
Sbjct: 391 SVANELRHSRPVPAKKYDCVTLLFSGIVGF 420


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 226 PATGDAGTCGSASTPPRKP 282
           P + D     S S+PPR+P
Sbjct: 124 PESRDGPPSVSLSSPPREP 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,975
Number of Sequences: 438
Number of extensions: 1786
Number of successful extensions: 64
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)