Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00251
(317 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g57870.1 68414.m06566 shaggy-related protein kinase kappa, pu... 33 0.041
At5g26751.1 68418.m03187 shaggy-related protein kinase alpha / A... 32 0.096
At3g05840.2 68416.m00656 shaggy-related protein kinase gamma / A... 32 0.096
At3g05840.1 68416.m00655 shaggy-related protein kinase gamma / A... 32 0.096
At4g00720.1 68417.m00098 shaggy-related protein kinase theta / A... 31 0.13
At1g09840.3 68414.m01108 shaggy-related protein kinase kappa / A... 31 0.13
At1g09840.2 68414.m01107 shaggy-related protein kinase kappa / A... 31 0.13
At1g09840.1 68414.m01106 shaggy-related protein kinase kappa / A... 31 0.13
At5g14640.1 68418.m01715 protein kinase family protein similar t... 29 0.89
At4g36820.1 68417.m05222 hypothetical protein contains Pfam doma... 28 1.2
At3g61160.2 68416.m06845 shaggy-related protein kinase beta / AS... 28 1.2
At3g61160.1 68416.m06844 shaggy-related protein kinase beta / AS... 28 1.2
At5g44290.1 68418.m05421 protein kinase family protein contains ... 28 1.6
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 28 1.6
At2g31850.1 68415.m03889 expressed protein 27 2.1
At1g10890.1 68414.m01251 F-box family protein contains Pfam PF00... 27 2.7
At4g18710.1 68417.m02766 shaggy-related protein kinase eta / ASK... 27 3.6
At3g28030.1 68416.m03499 UV hypersensitive protein (UVH3) / DNA-... 27 3.6
At2g10175.1 68415.m01058 hypothetical protein 27 3.6
At1g79930.1 68414.m09340 heat shock protein, putative contains P... 27 3.6
At5g19290.1 68418.m02299 esterase/lipase/thioesterase family pro... 26 4.8
At3g18310.1 68416.m02330 expressed protein 26 4.8
At2g48160.1 68415.m06031 PWWP domain-containing protein 26 4.8
At3g48750.1 68416.m05324 cell division control protein 2 homolog... 26 6.3
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 26 6.3
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 26 6.3
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 26 6.3
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 26 6.3
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 26 6.3
At1g54520.1 68414.m06218 expressed protein 26 6.3
At1g06390.2 68414.m00676 shaggy-related protein kinase iota / AS... 26 6.3
At1g06390.1 68414.m00675 shaggy-related protein kinase iota / AS... 26 6.3
At5g62290.1 68418.m07820 nucleotide-sensitive chloride conductan... 25 8.3
At2g27700.1 68415.m03356 eukaryotic translation initiation facto... 25 8.3
>At1g57870.1 68414.m06566 shaggy-related protein kinase kappa,
putative / ASK-kappa, putative similar to shaggy-related
protein kinase kappa SP:Q39019 GI:717180 from
[Arabidopsis thaliana]
Length = 420
Score = 33.1 bits (72), Expect = 0.041
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 146 CYSICHKDNDPQENVINERTHLLEVTD 226
C +CH+D PQ ++N TH L++ D
Sbjct: 200 CCGLCHRDIKPQNLLVNPHTHQLKICD 226
>At5g26751.1 68418.m03187 shaggy-related protein kinase alpha /
ASK-alpha (ASK1) identical to shaggy-related protein
kinase alpha SP:P43288 GI:460832 from [Arabidopsis
thaliana]
Length = 405
Score = 31.9 bits (69), Expect = 0.096
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 146 CYSICHKDNDPQENVINERTHLLEVTD 226
C +CH+D PQ ++N TH +++ D
Sbjct: 187 CIGVCHRDIKPQNLLVNPHTHQVKLCD 213
>At3g05840.2 68416.m00656 shaggy-related protein kinase gamma /
ASK-gamma (ASK3) identical to shaggy-related protein
kinase gamma SP:P43289 GI:456509 from [Arabidopsis
thaliana]
Length = 409
Score = 31.9 bits (69), Expect = 0.096
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 146 CYSICHKDNDPQENVINERTHLLEVTD 226
C +CH+D PQ ++N TH +++ D
Sbjct: 191 CIGVCHRDIKPQNLLVNPHTHQVKLCD 217
>At3g05840.1 68416.m00655 shaggy-related protein kinase gamma /
ASK-gamma (ASK3) identical to shaggy-related protein
kinase gamma SP:P43289 GI:456509 from [Arabidopsis
thaliana]
Length = 409
Score = 31.9 bits (69), Expect = 0.096
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 146 CYSICHKDNDPQENVINERTHLLEVTD 226
C +CH+D PQ ++N TH +++ D
Sbjct: 191 CIGVCHRDIKPQNLLVNPHTHQVKLCD 217
>At4g00720.1 68417.m00098 shaggy-related protein kinase theta /
ASK-theta (ASK8) identical to shaggy-related protein
kinase theta (ASK-theta) [Arabidopsis thaliana]
SWISS-PROT:Q96287
Length = 472
Score = 31.5 bits (68), Expect = 0.13
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 155 ICHKDNDPQENVINERTHLLEVTD-QQQETLVP 250
+CH+D PQ ++N +TH L++ D + LVP
Sbjct: 259 VCHRDIKPQNLLVNPQTHQLKICDFGSAKMLVP 291
>At1g09840.3 68414.m01108 shaggy-related protein kinase kappa /
ASK-kappa (ASK10) identical to shaggy-related protein
kinase kappa SP:Q39019 GI:717180 from [Arabidopsis
thaliana]
Length = 421
Score = 31.5 bits (68), Expect = 0.13
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 149 YSICHKDNDPQENVINERTHLLEVTD 226
+ +CH+D PQ ++N TH L++ D
Sbjct: 202 FGLCHRDIKPQNLLVNPHTHQLKICD 227
>At1g09840.2 68414.m01107 shaggy-related protein kinase kappa /
ASK-kappa (ASK10) identical to shaggy-related protein
kinase kappa SP:Q39019 GI:717180 from [Arabidopsis
thaliana]
Length = 421
Score = 31.5 bits (68), Expect = 0.13
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 149 YSICHKDNDPQENVINERTHLLEVTD 226
+ +CH+D PQ ++N TH L++ D
Sbjct: 202 FGLCHRDIKPQNLLVNPHTHQLKICD 227
>At1g09840.1 68414.m01106 shaggy-related protein kinase kappa /
ASK-kappa (ASK10) identical to shaggy-related protein
kinase kappa SP:Q39019 GI:717180 from [Arabidopsis
thaliana]
Length = 421
Score = 31.5 bits (68), Expect = 0.13
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 149 YSICHKDNDPQENVINERTHLLEVTD 226
+ +CH+D PQ ++N TH L++ D
Sbjct: 202 FGLCHRDIKPQNLLVNPHTHQLKICD 227
>At5g14640.1 68418.m01715 protein kinase family protein similar to
glycogen synthase kinase-3 homolog MsK-3 SP:P51139 from
[Medicago sativa]; contains Pfam profile PF00069:
Protein kinase domain
Length = 410
Score = 28.7 bits (61), Expect = 0.89
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 155 ICHKDNDPQENVINERTHLLEVTD 226
+CH+D PQ ++N TH +++ D
Sbjct: 195 VCHRDIKPQNLLVNPHTHQVKLCD 218
>At4g36820.1 68417.m05222 hypothetical protein contains Pfam domain,
PF04678: Protein of unknown function, DUF607
Length = 344
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 110 CFNSLKTAVMGCC-YSICHKDNDPQENVINERTHLLEVTDQQQETLV 247
C + L ++ G S H NDP+ +NE + V DQ+ +LV
Sbjct: 189 CVDQLTKSIEGLLPLSQIHNPNDPRRKELNELEAIKTVIDQKAHSLV 235
>At3g61160.2 68416.m06845 shaggy-related protein kinase beta /
ASK-beta (ASK2) identical to shaggy-related protein
kinase beta SP:O23145 GI:2569931 from [Arabidopsis
thaliana]
Length = 438
Score = 28.3 bits (60), Expect = 1.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 155 ICHKDNDPQENVINERTHLLEVTD 226
+CH+D PQ ++N TH +++ D
Sbjct: 230 VCHRDIKPQNLLVNNVTHEVKICD 253
>At3g61160.1 68416.m06844 shaggy-related protein kinase beta /
ASK-beta (ASK2) identical to shaggy-related protein
kinase beta SP:O23145 GI:2569931 from [Arabidopsis
thaliana]
Length = 431
Score = 28.3 bits (60), Expect = 1.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 155 ICHKDNDPQENVINERTHLLEVTD 226
+CH+D PQ ++N TH +++ D
Sbjct: 223 VCHRDIKPQNLLVNNVTHEVKICD 246
>At5g44290.1 68418.m05421 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 644
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +1
Query: 163 QRQRPTGERYKRKDTSTR 216
+RQRPT E+++R+D+ TR
Sbjct: 451 KRQRPTQEKHERQDSQTR 468
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 27.9 bits (59), Expect = 1.6
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = +2
Query: 14 GIPTIFSIFIHAKRSRYKTFMQSDDEDTSLHSCFNSLKTAVMGCCYSICHKDNDPQENVI 193
GIP I +FI K+ R F D+E S L T + +CH+D DP+
Sbjct: 1297 GIPDINKVFI--KQVRKSRF---DEEGGFKTSEEWMLDTEGVNLLAVMCHEDVDPKRTTS 1351
Query: 194 NERTHLLEV 220
N ++EV
Sbjct: 1352 NHLIEIIEV 1360
>At2g31850.1 68415.m03889 expressed protein
Length = 113
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 208 STRSNGPATGDAGTCGSASTPPRKPDEQTALNRI 309
+TR NG DAG GS++ PD T N +
Sbjct: 54 ATRLNGLRQDDAGLSGSSTGSCSSPDSSTGSNSV 87
>At1g10890.1 68414.m01251 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 592
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 160 PQRQRPTGERYKRKDTSTRSNGPA-TGDAGTCGSA 261
P+R+ PT +RYKR+ + + + PA A T SA
Sbjct: 21 PKRRSPTPKRYKRQKSRSSTPSPAKRSPAATLESA 55
>At4g18710.1 68417.m02766 shaggy-related protein kinase eta /
ASK-eta (ASK7) identical to shaggy-related protein
kinase eta (ASK-eta) [Arabidopsis thaliana]
SWISS-PROT:Q39011
Length = 380
Score = 26.6 bits (56), Expect = 3.6
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +2
Query: 155 ICHKDNDPQENVINERTHLLEVTD 226
+CH+D PQ +++ TH +++ D
Sbjct: 161 VCHRDLKPQNLLVDPLTHQVKICD 184
>At3g28030.1 68416.m03499 UV hypersensitive protein (UVH3) /
DNA-repair protein, putative identical to UV
hypersensitive protein [Arabidopsis thaliana]
gi|13649704|gb|AAK37472; similar to Swiss-Prot:P14629
DNA-repair protein complementing XP-G cells homolog
(Xeroderma pigmentosum group G complementing protein
homolog) [Xenopus laevis]
Length = 1479
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 152 SICHKDNDPQENVINERTHLLEVTDQQQE 238
S+ + DP NV+ R +L TD Q E
Sbjct: 831 SLVTESRDPSRNVVRSRIGILHDTDSQNE 859
>At2g10175.1 68415.m01058 hypothetical protein
Length = 122
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 77 QSDDEDTSLHSCFNSLKTAVMGCCYS 154
Q D T LH+ ++SL T GC +S
Sbjct: 18 QYDSLSTDLHTKYDSLSTGYFGCFWS 43
>At1g79930.1 68414.m09340 heat shock protein, putative contains Pfam
profile: PF00012 Heat shock hsp70 proteins; similar to
heat-shock proteins GB:CAA94389, GB:AAD55461
[Arabidopsis thaliana]
Length = 831
Score = 26.6 bits (56), Expect = 3.6
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +2
Query: 59 RYKTFMQSDDEDTSLHSCFNSLKTAVMGCCYSICHKDNDPQENVINERTHL---LEVTDQ 229
RYK ++ L C NS + A M H + ++ V+NE L Q
Sbjct: 693 RYKESLERGSVIDQLGYCINSYREAAMSTDPKFDHIELAEKQKVLNECVEAEAWLRGKQQ 752
Query: 230 QQETL 244
QQ+TL
Sbjct: 753 QQDTL 757
>At5g19290.1 68418.m02299 esterase/lipase/thioesterase family
protein low similarity to monoglyceride lipase [Homo
sapiens] GI:14594904; contains Interpro entry IPR000379
Length = 330
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = -3
Query: 129 VFKELKHECNEVSSSSDCINVLYRDLLAWIK 37
++ EL H+ + S + ++++Y D+L+W+K
Sbjct: 286 IYPELWHQM--IGESEEKVDLVYGDMLSWLK 314
>At3g18310.1 68416.m02330 expressed protein
Length = 873
Score = 26.2 bits (55), Expect = 4.8
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 182 PVGRCLCGKC 153
PVG+CLCG C
Sbjct: 434 PVGKCLCGDC 443
>At2g48160.1 68415.m06031 PWWP domain-containing protein
Length = 1366
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 184 ERYKRKDTSTRSNGPATGDAGTCGSASTPPRKP 282
ERY++ R++ P + + GT GSA P
Sbjct: 106 ERYEKLKQQERASDPKSAEEGTLGSAENTTLMP 138
>At3g48750.1 68416.m05324 cell division control protein 2 homolog A
(CDC2A) identical to cell division control protein 2
homolog A [Arabidopsis thaliana] SWISS-PROT:P24100
Length = 294
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Frame = +2
Query: 26 IFSIFIHAKRSRYKTFMQSDDEDTSLHSCFNSLKTAVMGCCYS----ICHKDNDPQENVI 193
++ +F + K + D LH L + G Y + H+D PQ +I
Sbjct: 76 LYLVFEYLDLDLKKHMDSTPDFSKDLHMIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLI 135
Query: 194 NERTHLLEVTD 226
+ RT+ L++ D
Sbjct: 136 DRRTNSLKLAD 146
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 184 ERYKRKDTSTRSNGPA--TGDAGTCGSASTPPRKPDEQTALNRI 309
++ RK S+GPA TG T G +++ P P T ++ +
Sbjct: 371 QQNNRKRKGPSSSGPANSTGTGNTVGPSNSQPSTPSTHTPVDGV 414
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 184 ERYKRKDTSTRSNGPA--TGDAGTCGSASTPPRKPDEQTALNRI 309
++ RK S+GPA TG T G +++ P P T ++ +
Sbjct: 371 QQNNRKRKGPSSSGPANSTGTGNTVGPSNSQPSTPSTHTPVDGV 414
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 184 ERYKRKDTSTRSNGPA--TGDAGTCGSASTPPRKPDEQTALNRI 309
++ RK S+GPA TG T G +++ P P T ++ +
Sbjct: 371 QQNNRKRKGPSSSGPANSTGTGNTVGPSNSQPSTPSTHTPVDGV 414
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 184 ERYKRKDTSTRSNGPA--TGDAGTCGSASTPPRKPDEQTALNRI 309
++ RK S+GPA TG T G +++ P P T ++ +
Sbjct: 371 QQNNRKRKGPSSSGPANSTGTGNTVGPSNSQPSTPSTHTPVDGV 414
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 184 ERYKRKDTSTRSNGPA--TGDAGTCGSASTPPRKPDEQTALNRI 309
++ RK S+GPA TG T G +++ P P T ++ +
Sbjct: 371 QQNNRKRKGPSSSGPANSTGTGNTVGPSNSQPSTPSTHTPVDGV 414
>At1g54520.1 68414.m06218 expressed protein
Length = 391
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 212 LEVTDQQQETLVPVDQRPHHR 274
LE+T Q +P QRPHHR
Sbjct: 8 LELTPFQWNQPLPYTQRPHHR 28
>At1g06390.2 68414.m00676 shaggy-related protein kinase iota /
ASK-iota (ASK9) (GSK1) identical to shaggy-related
protein kinase iota (ASK-iota) [Arabidopsis thaliana]
SWISS-PROT:Q39012
Length = 407
Score = 25.8 bits (54), Expect = 6.3
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +2
Query: 155 ICHKDNDPQENVINERTHLLEVTD 226
+CH+D PQ +++ TH +++ D
Sbjct: 191 VCHRDVKPQNLLVDPLTHQVKLCD 214
>At1g06390.1 68414.m00675 shaggy-related protein kinase iota /
ASK-iota (ASK9) (GSK1) identical to shaggy-related
protein kinase iota (ASK-iota) [Arabidopsis thaliana]
SWISS-PROT:Q39012
Length = 407
Score = 25.8 bits (54), Expect = 6.3
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +2
Query: 155 ICHKDNDPQENVINERTHLLEVTD 226
+CH+D PQ +++ TH +++ D
Sbjct: 191 VCHRDVKPQNLLVDPLTHQVKLCD 214
>At5g62290.1 68418.m07820 nucleotide-sensitive chloride conductance
regulator (ICln) family protein contains PF03517:
Nucleotide-sensitive chloride conductance regulator
(ICln)
Length = 229
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +2
Query: 98 SLHSCFNSLKTAVMGCCYSICHKDNDPQENVINERTHLLEVTDQQQETLVPVD 256
SLH+ + C Y+ + D + +E T +L+++ ++ LVP D
Sbjct: 78 SLHAVSRDPEAYSSPCIYTQIEVEEDEDDESDSESTEVLDLSKIREMRLVPSD 130
>At2g27700.1 68415.m03356 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|P39730 Translation initiation factor IF-2
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00009: Elongation factor Tu GTP binding domain,
PF03144: Elongation factor Tu domain 2
Length = 479
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 156 ML*QQPITAVFKELKHECNEVSSSSDCINVLYRDL 52
+L PI + H +EV +++CIN++ +DL
Sbjct: 307 LLTPHPIKELHVNGNHVHHEVIKAAECINIIAKDL 341
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,727,149
Number of Sequences: 28952
Number of extensions: 120003
Number of successful extensions: 434
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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