Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00250
(513 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1395 - 26737972-26738418,26738505-26738738,26738887-267391... 61 4e-10
01_07_0024 - 40559423-40559863,40559959-40560192,40560546-405608... 58 5e-09
11_05_0069 - 18814789-18815326,18815742-18816001,18816077-188166... 57 1e-08
09_04_0680 - 19401891-19402049,19402556-19402928,19403385-194034... 57 1e-08
08_02_1418 - 26931896-26932339,26932435-26932668,26932805-269331... 54 5e-08
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986... 54 7e-08
01_06_1317 - 36251231-36251341,36252514-36252609,36252879-362529... 50 8e-07
12_01_0934 - 9273325-9273807,9273898-9274062,9274155-9274235,927... 48 4e-06
03_03_0043 + 14016958-14017106,14017198-14017291,14018488-140185... 45 4e-05
02_05_1239 + 35174901-35174903,35175001-35175102,35175180-351752... 43 1e-04
10_05_0114 + 9294747-9294788,9294883-9294996,9295066-9295173,929... 43 2e-04
04_04_0939 - 29530242-29531087,29531406-29531597,29531690-295317... 42 2e-04
02_01_0624 - 4681834-4682298,4684250-4684398,4684479-4684557,468... 38 0.006
11_06_0047 + 19595904-19596185,19596284-19596424,19597195-195973... 37 0.008
07_03_1133 - 24199643-24200422,24200786-24200968,24201241-242013... 37 0.008
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145... 37 0.011
01_06_1472 - 37609732-37609851,37609883-37610104,37610542-376109... 36 0.014
05_04_0438 + 21244735-21244782,21245089-21245274,21245307-212453... 35 0.033
04_04_0794 + 28104725-28104829,28105721-28105762,28106470-281065... 34 0.058
11_01_0199 + 1563483-1563572,1563673-1563852,1564091-1564402,156... 33 0.10
03_02_0110 - 5678057-5678794,5679279-5679470,5679971-5680087,568... 29 1.7
08_01_0025 - 184899-185384,185707-185940,187156-187341,188108-18... 29 2.9
03_05_0224 - 22099472-22099813,22100496-22101032 29 2.9
03_02_0501 - 8920458-8920646,8920918-8921024,8921136-8921352,892... 28 5.1
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 28 5.1
08_01_0601 - 5268520-5271112,5272448-5272950 27 6.7
01_06_0948 - 33242219-33242530,33242632-33242782,33242874-332431... 27 8.8
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 27 8.8
>08_02_1395 -
26737972-26738418,26738505-26738738,26738887-26739183,
26739399-26739581,26739778-26739834,26739960-26740016,
26740228-26740322,26740714-26740765,26740821-26740910
Length = 503
Score = 61.3 bits (142), Expect = 4e-10
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Frame = +1
Query: 4 KMDHHCPWVNNCVCFHNYKFFMLFLGYALLYCLFVMATCLPYFIRL--------WKGDFG 159
+ DHHCPWV C+ NY+FF +F+ L CL+V A C Y I++ WK
Sbjct: 263 RFDHHCPWVGQCIGLRNYRFFYMFVFSTTLLCLYVFAFCWVYIIKIRNAESLSVWKAMLK 322
Query: 160 TATSSGRYHIIFAFFVSLMFAISLGSLFGYHC----TSSSIIEQL*KRLERRCS 309
T S +I F+ + F +G L +HC T+ + E R +RR +
Sbjct: 323 TPAS---IVLIIYCFLCVWF---VGGLSVFHCYLMSTNQTTYENFRYRYDRRAN 370
>01_07_0024 -
40559423-40559863,40559959-40560192,40560546-40560842,
40561048-40561230,40561534-40561590,40561851-40561937
Length = 432
Score = 57.6 bits (133), Expect = 5e-09
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 4 KMDHHCPWVNNCVCFHNYKFFMLFLGYALLYCLFVMATCLPYFIRL 141
+ DHHCPWV C+ NY+FF +F+ L CL+V C Y +++
Sbjct: 194 RFDHHCPWVGQCIGLRNYRFFYMFVFSTTLLCLYVFGFCWVYIVKI 239
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 252 LYLVVNNRTTLEAFRAPMFRGGADKNGFSIGAFKNFKEVF 371
LYL+ N+TT E FR +R N ++ G +N K++F
Sbjct: 279 LYLMSTNQTTYENFR---YRYDQRANPYNRGVMENIKDIF 315
>11_05_0069 -
18814789-18815326,18815742-18816001,18816077-18816631,
18816907-18817062
Length = 502
Score = 56.8 bits (131), Expect = 1e-08
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Frame = +1
Query: 4 KMDHHCPWVNNCVCFHNYKFFMLFLGYALLYCLFVMATC---LPYFIRLWKGDFGTATSS 174
+ DHHCPWV C+ NY+FF +F+ CL+V C L R + G A
Sbjct: 223 RFDHHCPWVGQCIGKRNYRFFFMFISSTTFLCLYVFVFCWVNLAMTARQFGCSMGRAVVE 282
Query: 175 GRYH--IIFAFFVSLMFAISLGSLFGY-HCTSSSIIEQL*KRLERRCS 309
+I FV+ F L + Y CT+ + E R ER+ +
Sbjct: 283 SPVSGILIVYTFVTAWFVGGLTAFHSYLVCTNQTTYENFRYRYERKAN 330
>09_04_0680 -
19401891-19402049,19402556-19402928,19403385-19403421,
19403587-19403667,19405215-19405280,19407453-19407948,
19408050-19408283,19408473-19408772,19409241-19409423,
19410412-19410414
Length = 643
Score = 56.8 bits (131), Expect = 1e-08
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Frame = +1
Query: 4 KMDHHCPWVNNCVCFHNYKFFMLFLGYALLYCLFVMATCLPYFIR--------LWKGDFG 159
+ DHHCPWV C+ NY+FF +F+ L CL+V C Y ++ +WK
Sbjct: 148 RFDHHCPWVGQCIGRRNYRFFYMFVFSTTLLCLYVFGFCWVYIVKIRDAENSTIWKAMLK 207
Query: 160 TATSSGRYHIIFAFFVSLMFAISLGSLFGYH--CTSSSIIEQL*KRLERRCS 309
T S +I F+ + F L S+F ++ T+ + E R +RR +
Sbjct: 208 TPAS---IVLIIYCFICVWFVGGL-SVFHFYLMSTNQTTYENFRYRYDRRAN 255
>08_02_1418 -
26931896-26932339,26932435-26932668,26932805-26933110,
26933462-26933644,26934386-26934493
Length = 424
Score = 54.4 bits (125), Expect = 5e-08
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +1
Query: 4 KMDHHCPWVNNCVCFHNYKFFMLFLGYALLYCLFVMATC 120
+ DHHCPWV C+ NY+FF +F+ L C++V A C
Sbjct: 185 RFDHHCPWVGQCIGKRNYRFFFMFVSSTTLLCVYVFAFC 223
>01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,
9863016-9863674,9863749-9863852,9863950-9864192,
9864262-9864376,9864696-9864909,9864995-9865511,
9866439-9866448,9867363-9867551,9867755-9868084,
9868639-9868872,9869303-9869743
Length = 1171
Score = 54.0 bits (124), Expect = 7e-08
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +1
Query: 4 KMDHHCPWVNNCVCFHNYKFFMLFLGYALLYCLFV 108
K DHHCPWV C+ NY+FF LF+ + L C++V
Sbjct: 933 KFDHHCPWVGQCIGLRNYRFFFLFISTSTLLCVYV 967
Score = 33.1 bits (72), Expect = 0.13
Identities = 25/76 (32%), Positives = 37/76 (48%)
Frame = +3
Query: 144 EGRLRYSDIEWSLSHHIRFFRVANVRDISGFTIRIPLYLVVNNRTTLEAFRAPMFRGGAD 323
+G L S LS + + +V + G T+ LYL+ N+TT E FR +R
Sbjct: 983 DGSLLKSMAGEPLSVVLIVYTFVSVWFVGGLTV-FHLYLMSTNQTTYENFR---YRYDKK 1038
Query: 324 KNGFSIGAFKNFKEVF 371
+N ++ GA N EVF
Sbjct: 1039 ENPYNRGAISNIAEVF 1054
>01_06_1317 -
36251231-36251341,36252514-36252609,36252879-36252956,
36253037-36253138,36254509-36254784
Length = 220
Score = 50.4 bits (115), Expect = 8e-07
Identities = 26/93 (27%), Positives = 45/93 (48%)
Frame = +1
Query: 4 KMDHHCPWVNNCVCFHNYKFFMLFLGYALLYCLFVMATCLPYFIRLWKGDFGTATSSGRY 183
+ DHHC W+NNCV NYK F++F+ YA++ L+ + + + + + S R
Sbjct: 91 RKDHHCIWINNCVGHENYKIFLVFVLYAVVASLYSLVLVIGGAVHSLPKNEQLGSDSSRT 150
Query: 184 HIIFAFFVSLMFAISLGSLFGYHCTSSSIIEQL 282
I ++ A G+L+ +H + E L
Sbjct: 151 SIYHEGVRAMWLAEKAGNLY-HHPYDLGVYENL 182
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +3
Query: 333 FSIGAFKNFKEVFGNSPNLWLVPVFTSLGDGCEYPVRREHQLQT 464
+ +G ++N V G + WL P+ + G+G + + L T
Sbjct: 174 YDLGVYENLVSVLGPNALCWLCPISRNTGNGIRFRTSYDIPLST 217
>12_01_0934 -
9273325-9273807,9273898-9274062,9274155-9274235,
9274347-9274475,9274590-9274661,9274758-9274826,
9275143-9275514,9275590-9275703,9275729-9275848
Length = 534
Score = 48.0 bits (109), Expect = 4e-06
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Frame = +1
Query: 10 DHHCPWVNNCVCFHNYKFFMLFLGYALLYCLFVMATCLPYFIRLWKGDFGTATS-SGRYH 186
DHHC W+NNC+ NY F+L + + LL + T + F+R + G R H
Sbjct: 221 DHHCRWLNNCIGRRNYASFILLMFFVLLMLVIEGGTAIAIFVRCFTDSKGLKMEMEHRLH 280
Query: 187 I------------IFAFFVSLMFAISLGSLFGYH 252
I +F F +L ++LG LF +H
Sbjct: 281 IRLPKGAHAALSMVFVIF-TLYSTVALGQLFFFH 313
>03_03_0043 +
14016958-14017106,14017198-14017291,14018488-14018582,
14018658-14018825,14019091-14019163,14019236-14019288,
14019720-14019811,14020141-14020193,14020272-14020397,
14020710-14020955
Length = 382
Score = 44.8 bits (101), Expect = 4e-05
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +1
Query: 4 KMDHHCPWVNNCVCFHNYKFFMLFLGYALLYCLF 105
+ DHHC W+NNC+ N ++F+ FL + L CL+
Sbjct: 185 RFDHHCGWMNNCIGEKNTRYFVAFLVWHFLICLY 218
>02_05_1239 +
35174901-35174903,35175001-35175102,35175180-35175248,
35176466-35176561,35176724-35176813
Length = 119
Score = 43.2 bits (97), Expect = 1e-04
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +1
Query: 7 MDHHCPWVNNCVCFHNYKFFMLFLGYALLYCLF 105
MDHHC W+NNCV + NYK F++ + A + L+
Sbjct: 1 MDHHCVWINNCVGYANYKSFIICVLNATIGSLY 33
>10_05_0114 +
9294747-9294788,9294883-9294996,9295066-9295173,
9295774-9296145,9296584-9296652,9296754-9296825,
9297070-9297198,9297690-9297770,9298622-9298807,
9299135-9299860
Length = 632
Score = 42.7 bits (96), Expect = 2e-04
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Frame = +1
Query: 10 DHHCPWVNNCVCFHNYK-FFMLFLGYALLYCLFVMATCLPYFIRLWK-GDF--------G 159
DHHC W+NNC+ NYK FF+L LL + + L + L K G+F G
Sbjct: 231 DHHCRWLNNCIGKRNYKRFFILMASAVLLLIMQWLVGILVLILCLLKRGEFSGQIISKLG 290
Query: 160 TATSSGRYHIIF--AFFVSLMFAISLGSLFGYH 252
++ S+ + I+ ++++ I L LF +H
Sbjct: 291 SSFSTAAFVIVVMTCTLLAMLATIPLAQLFCFH 323
>04_04_0939 -
29530242-29531087,29531406-29531597,29531690-29531770,
29532300-29532428,29532579-29532650,29532761-29532829,
29533809-29533891,29534101-29534203,29534289-29534402,
29536230-29536274
Length = 577
Score = 42.3 bits (95), Expect = 2e-04
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Frame = +1
Query: 10 DHHCPWVNNCVCFHNYKFFMLFLGYALLYCLFVMATCLPYFIRLW------KGDFGTATS 171
DHHC W+NNCV NY F+ + +L + + F+R + + G
Sbjct: 134 DHHCRWLNNCVGRKNYVTFLCLMAVSLAWLAVESGVGIAVFVRCFTDKAAIEDQIGEKLG 193
Query: 172 SGRYHIIFAFF------VSLMFAISLGSLFGYH 252
G +FA +S++ ++ LG LF +H
Sbjct: 194 YGLSRALFAAIGALGTALSMLASVPLGELFFFH 226
>02_01_0624 -
4681834-4682298,4684250-4684398,4684479-4684557,
4684827-4684925,4685004-4685081,4685231-4685288,
4685814-4685913,4686000-4686008,4686105-4686138,
4686729-4686911,4687099-4687126,4687268-4687380,
4688253-4688459,4689212-4689511
Length = 633
Score = 37.5 bits (83), Expect = 0.006
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +1
Query: 4 KMDHHCPWVNNCVCFHN-YKFFMLFL 78
+ DHHCPWV+NC+ N ++FFM +
Sbjct: 389 QFDHHCPWVSNCIGKKNKWEFFMFLI 414
>11_06_0047 +
19595904-19596185,19596284-19596424,19597195-19597307,
19597970-19598049,19598557-19598720,19598931-19599060,
19599155-19599254,19599452-19599500,19599775-19599849,
19600026-19600124,19600745-19600823,19600897-19601045,
19601334-19601393,19601490-19601684
Length = 571
Score = 37.1 bits (82), Expect = 0.008
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 4 KMDHHCPWVNNCVCFHNYKFFMLFL 78
+ DHHCPW++NCV N F +FL
Sbjct: 397 QFDHHCPWISNCVGRRNKWDFFVFL 421
>07_03_1133 -
24199643-24200422,24200786-24200968,24201241-24201321,
24201439-24201567,24201814-24201885,24201970-24202038,
24202130-24202513,24203813-24203926,24204033-24204074
Length = 617
Score = 37.1 bits (82), Expect = 0.008
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 10 DHHCPWVNNCVCFHNY-KFFMLFLGYALLYCL 102
DHHC W+NNC+ NY +FF+L L L
Sbjct: 199 DHHCRWLNNCIGKRNYMRFFILMTSSLFLLIL 230
>06_03_0913 +
25913231-25913609,25913702-25913775,25914400-25914540,
25914834-25914946,25915359-25915491,25916213-25916351,
25916428-25916527,25916906-25916963,25917122-25917199,
25917278-25917376,25917657-25917735,25917826-25917974,
25918529-25918834,25918994-25919032
Length = 628
Score = 36.7 bits (81), Expect = 0.011
Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +1
Query: 4 KMDHHCPWVNNCVCFHN-YKFFM 69
+ DHHCPWV+NC+ N ++FFM
Sbjct: 424 QFDHHCPWVSNCIGKKNKWEFFM 446
>01_06_1472 -
37609732-37609851,37609883-37610104,37610542-37610922,
37612583-37612816,37613589-37613738,37613831-37614016,
37615058-37615120
Length = 451
Score = 36.3 bits (80), Expect = 0.014
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +1
Query: 52 NYKFFMLFLGYALLYCLFVMATCLPYFIRLWKGDFGTATSSGRYH-----IIFAFFVSLM 216
NY++F LF+ A + C++V A Y L GD+ T + ++ ++ F+ L
Sbjct: 135 NYRYFFLFVSSASILCIYVFAMSALYIKILMDGDYPTVWKALKHSPASLALLIYCFICLW 194
Query: 217 FAISLGSLFGYH 252
F +G L G+H
Sbjct: 195 F---VGGLTGFH 203
Score = 31.5 bits (68), Expect = 0.41
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 255 YLVVNNRTTLEAFRAPMFRGGADKNGFSIGAFKNFKEVF 371
YL+ N+TT E FR +R N + G NF EVF
Sbjct: 205 YLISTNQTTYENFR---YRADGRPNAYDRGCMNNFLEVF 240
>05_04_0438 +
21244735-21244782,21245089-21245274,21245307-21245384,
21245385-21245678,21246137-21246262,21246935-21247168,
21247534-21248061
Length = 497
Score = 35.1 bits (77), Expect = 0.033
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Frame = +1
Query: 52 NYKFFMLFLGYALLYCLFVMATCLPYFIRLWKGDFGTATSSGRYH-----IIFAFFVSLM 216
NY+FF LF+ + L C++V A Y L + + T + ++ ++ F++L
Sbjct: 246 NYRFFFLFVSSSTLLCIYVFAMSALYIKFLMEEGYPTVWKALKHSPASLVLMIYCFIALW 305
Query: 217 FAISLGSLFGYH----CTSSSIIEQL*KRLERR 303
F +G L G+H CT+ + E R + R
Sbjct: 306 F---VGGLTGFHSYLICTNQTTYENFRYRSDNR 335
Score = 31.1 bits (67), Expect = 0.54
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 4 KMDHHCPWVNNCV 42
+ DHHCPWV C+
Sbjct: 188 RFDHHCPWVGQCI 200
>04_04_0794 +
28104725-28104829,28105721-28105762,28106470-28106544,
28106811-28106950,28107036-28107093,28107239-28107241,
28107740-28107849,28108562-28108648,28108773-28108856,
28109212-28109277,28109377-28109488,28109949-28110149
Length = 360
Score = 34.3 bits (75), Expect = 0.058
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 1 LKMDHHCPWVNNCVCFHNYKFFMLFLGYALLYCLFVMATCLPYF 132
L+ DHHC W+ C+ NY F ++ + ++ +A + +F
Sbjct: 156 LQFDHHCVWLGTCIAKRNYCRFWWYIFEQTVLTVWTVAFYIQFF 199
>11_01_0199 +
1563483-1563572,1563673-1563852,1564091-1564402,
1564753-1564800,1565205-1565438,1565632-1566219
Length = 483
Score = 33.5 bits (73), Expect = 0.10
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 16/51 (31%)
Frame = +1
Query: 4 KMDHHCPWVNNCVCF----------------HNYKFFMLFLGYALLYCLFV 108
K DHHCPWV C+ NY++F LF+ + C+ V
Sbjct: 180 KFDHHCPWVGQCIGLLKKTHQSSKLNYTRLNRNYRYFFLFVATSTFLCIIV 230
Score = 27.1 bits (57), Expect = 8.8
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +3
Query: 225 ISGFTIRIPLYLVVNNRTTLEAFRAPMFRGGADKNGFSIGAFKNFKEVF 371
+ G T+ LYL+ N+TT E FR + N + NF EVF
Sbjct: 273 VGGLTV-FHLYLISTNQTTYENFR---YHYNKKDNPYRKSVAANFVEVF 317
>03_02_0110 -
5678057-5678794,5679279-5679470,5679971-5680087,
5680331-5680402,5680444-5680569,5681086-5681445,
5681944-5682057,5682158-5682199
Length = 586
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 25 WVNNCVCFHNYKFFMLFLGYALLYCL 102
W+NNC+ NYK F L + A+L L
Sbjct: 215 WLNNCIGKRNYKGFFLLMTSAVLLWL 240
>08_01_0025 -
184899-185384,185707-185940,187156-187341,188108-188158
Length = 318
Score = 28.7 bits (61), Expect = 2.9
Identities = 7/25 (28%), Positives = 16/25 (64%)
Frame = +1
Query: 46 FHNYKFFMLFLGYALLYCLFVMATC 120
+ NY++F F+ A + C+++ + C
Sbjct: 79 YRNYRYFFCFVSSAAILCIYIFSMC 103
>03_05_0224 - 22099472-22099813,22100496-22101032
Length = 292
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 310 EAAPTKMASQLVLSKTSRKCSVIVRTSGWCLYSQASATAANIRYVANTSCRRS 468
EAA AS LVL + R+ + + R L+ +A AA +Y RRS
Sbjct: 200 EAARRHGASLLVLGQRRRRRAAVARWLQLALWPAVAAAAAKSKYWRRRGARRS 252
>03_02_0501 -
8920458-8920646,8920918-8921024,8921136-8921352,
8921744-8922157
Length = 308
Score = 27.9 bits (59), Expect = 5.1
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Frame = +1
Query: 103 FVMATCLPYFIRLWKGDFGTATSSGRYHIIFAFFVSLMFAISLGSLFGYHCTSSSIIEQL 282
F+MAT L L + SSG ++F VS + A+S GS++ + + QL
Sbjct: 160 FIMATNLESAYHLCQLAHPLLKSSGSGSVVFISSVSGVVAVSSGSVY---AMTKGAMNQL 216
Query: 283 *KRL-------ERRCSEAAPTKMASQLVLSKTSRK---CSVIVRTS 390
K L R + AP M + LV + +RK SV+ RT+
Sbjct: 217 AKNLACEWAKDNIRTNSVAPWYMKTSLVEDELARKDFADSVVRRTA 262
>02_05_1074 - 33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 27.9 bits (59), Expect = 5.1
Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 421 SPRLVNTGTNQRFGLLPNTSLKFLKA-PIEKPFLSAPPRNIGALNASKVVLL 269
S R V T + RF LLP S K+L A PIEK L PP N + + VV +
Sbjct: 1251 SSRGVLTLWDNRF-LLPVNSWKYLPATPIEKLCLFIPPPNSISSSGRPVVFV 1301
>08_01_0601 - 5268520-5271112,5272448-5272950
Length = 1031
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 30 EQLRLLPQLQVLHAVPWLRAA 92
++ +LP LQ LH VPW R A
Sbjct: 748 DERAVLPDLQTLHGVPWGRWA 768
>01_06_0948 -
33242219-33242530,33242632-33242782,33242874-33243111,
33243196-33243298,33243323-33243406,33243640-33243815,
33243943-33244074,33248406-33248967,33249084-33249842
Length = 838
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 130 FIRLWKGDFGTATSSGRYHIIFAFFVSLMFAISLGSLFGY 249
F+RL D G + S + +I A VS+ L L G+
Sbjct: 432 FVRLAAADLGLTSKSNKARVIIAIVVSISSVTFLSVLAGF 471
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 294 RAPMFRGGADKNGFSIGAFKNFKEVFGNSPN 386
RAP + G + G+ G NF++ G+ PN
Sbjct: 536 RAPAYGHGGGRGGYGGGRRDNFRDGGGHGPN 566
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,520,592
Number of Sequences: 37544
Number of extensions: 346312
Number of successful extensions: 1106
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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