Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00250
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   0.80 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   1.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   1.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   1.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   7.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   7.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.9  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 0.80
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 169 SSGRYHIIFAFFVSLMFAISLGSLFGY 249
           SSG+  +   FF+ ++  I +G+L  Y
Sbjct: 4   SSGKQQVYQLFFIQIVLIIVMGALMTY 30


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 459 QTFTSPQDPWLRVHGHQ 509
           QT+   + PW+++ GHQ
Sbjct: 233 QTYKKQRYPWVQLAGHQ 249


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 459 QTFTSPQDPWLRVHGHQ 509
           QT+   + PW+++ GHQ
Sbjct: 148 QTYKKQRYPWVQLAGHQ 164


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 459 QTFTSPQDPWLRVHGHQ 509
           QT+   + PW+++ GHQ
Sbjct: 467 QTYKKQRYPWVQLAGHQ 483


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 170 DVAVPKSPFQSRMKYG 123
           D+ +   PFQ RMK+G
Sbjct: 99  DLPISGKPFQIRMKHG 114


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +3

Query: 327 NGFSIGAFKNFKEVFGNSPNLWLVPV 404
           N ++   + N+K+++ N  N+  +PV
Sbjct: 339 NNYNNNNYNNYKKLYYNIINIEQIPV 364


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 233 VHYSDTIVPR 262
           V +SDTIVPR
Sbjct: 671 VRFSDTIVPR 680


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 323 QKWLLNWCFQK 355
           Q W+LNW  QK
Sbjct: 603 QVWILNWRNQK 613


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,661
Number of Sequences: 438
Number of extensions: 3672
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)