Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00248
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   5.2  
SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil...    25   9.1  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    25   9.1  

>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -2

Query: 203 FYEMLGNGRIRHRLLKLVQDRKQQLRIAVQDSYEDLKQH 87
           F   LGN    ++L +++++ +  +R+ V  +  DL+QH
Sbjct: 733 FTNWLGNNSKTNKLYRMLREIQVHMRLKVSANKLDLRQH 771


>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 195

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 678 LEFNVLIDRTVPVVE 634
           LE N +IDRT PV+E
Sbjct: 179 LELNPIIDRTFPVIE 193


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 613 IECYTTPLDDRDCPVDEYVKFKTTLSALSSTEPALYHALTSV 738
           +E +  P  D D P DE V        ++S +PAL  +++S+
Sbjct: 130 VETHLNPDTDPDIPSDEDVLTDEDTEEVASIQPALSTSVSSL 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,587
Number of Sequences: 5004
Number of extensions: 55720
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)