Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00248
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1105 + 9102059-9102167,9103770-9103907,9104125-9104267,910...    29   5.4  
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336...    29   5.4  
03_02_0489 + 8836306-8836500,8836906-8837082,8837175-8837321,883...    28   7.2  
07_03_0779 - 21464249-21464257,21465400-21466374                       28   9.5  
05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778           28   9.5  
03_04_0204 - 18444903-18445054,18445445-18445676,18445765-184458...    28   9.5  

>06_01_1105 +
           9102059-9102167,9103770-9103907,9104125-9104267,
           9104362-9104515,9104610-9104839,9105382-9105471,
           9105606-9105779,9105873-9106010,9106212-9106349,
           9106450-9106511,9106744-9106972,9108531-9109364
          Length = 812

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 500 RAFPGTRGSFPGCRLRHSTRSLHQDPGHLPLKMNHHQ 390
           R   GT+G  PG   R ST ++ ++P   P+++N+ Q
Sbjct: 34  RRADGTQGLLPGILQRFSTAAVAEEPISPPVQVNYTQ 70


>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
            3366324-3366449,3367056-3367262,3367399-3367492,
            3367575-3367621,3367705-3368157,3368261-3368560,
            3368656-3369114,3369189-3369410,3369659-3369890,
            3370051-3370422,3371210-3371322,3371682-3371903,
            3371977-3372180,3372308-3372572,3373123-3373311,
            3373441-3373768,3373843-3374248,3374339-3374648,
            3375677-3375837,3376825-3376998,3377265-3377609,
            3377713-3377754,3378585-3378734,3378847-3379002,
            3379088-3379540,3379651-3379966,3380402-3380839,
            3381475-3381697,3383538-3383852,3384033-3384095,
            3384699-3384903,3385362-3385425,3386014-3386204
          Length = 3048

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 3/134 (2%)
 Frame = +3

Query: 18   LPSFVELVLNRLTRKVKTSELRTMLLQVLIAILYSNPQLLFSILDKLQEAVPNASITQHF 197
            LP  +++VL   + K      +T L  V   ++   P +    + K++  + + +     
Sbjct: 1390 LPRIIDIVLQFYSEKTDLRSSKTSLHPVTKKVIAERPNI--EEIRKIRLLLLSLAEMSIK 1447

Query: 198  IKQWIHDTDCFMGLHDRK--LAC-SAFAHYWTWALSDPT*MSSFLSCCRPVWCCLMV*NE 368
            +K   HD    +   +R   +AC     H    ALS  + +SSFL    P+  C +  N 
Sbjct: 1448 LKVSQHDITTLVSFFERSQDVACIEDVLHMIIRALSHNSLLSSFLEKVNPLGGCYIFINL 1507

Query: 369  LTKAEPRLMMIHLQ 410
            L +    + ++ LQ
Sbjct: 1508 LKREFEPIRLLGLQ 1521


>03_02_0489 +
           8836306-8836500,8836906-8837082,8837175-8837321,
           8837636-8837737,8837824-8837894,8837992-8838059,
           8838595-8838836
          Length = 333

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 479 GSFPGCRLRHSTRSLHQDPGHLPLKMNHHQPRLG 378
           G+      R+ST+   Q P   P +++HHQP+LG
Sbjct: 4   GAAAAAARRYSTQQQQQQPP--PPQLHHHQPQLG 35


>07_03_0779 - 21464249-21464257,21465400-21466374
          Length = 327

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = -2

Query: 461 RLRHSTRSLHQDPGHLPLKMNHHQPRLGFRKLVSNHQTAPNRTAAA*E*THLGWVAEGPC 282
           R + S   +    G    ++  + P  G+  ++ +  T PN  A + + +HL     GPC
Sbjct: 186 RFQRSQHEMVTATGDSTGRLMKYDPTTGYLDVLQSGMTYPNGLAISADRSHLVVALTGPC 245

Query: 281 PVV 273
            +V
Sbjct: 246 KLV 248


>05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778
          Length = 1104

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 512 TACGRAFPGTRGSFPGCR 459
           T CG AFPG + S P  R
Sbjct: 818 TGCGSAFPGAKSSLPAVR 835


>03_04_0204 -
           18444903-18445054,18445445-18445676,18445765-18445836,
           18446201-18446347,18446559-18446614,18446727-18446832,
           18446938-18447025,18447112-18447230,18448975-18449580,
           18449803-18449898,18450232-18450422,18453287-18453416,
           18453531-18453566
          Length = 676

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 596 NRRMLPLNATQHPSTTGTVLSMSTLNSRP 682
           N +  P  ATQHP T+  VL  + +++RP
Sbjct: 255 NIQSAPGQATQHPQTSLPVLGSNNIHARP 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,163,948
Number of Sequences: 37544
Number of extensions: 414543
Number of successful extensions: 908
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)