Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00248
         (771 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18612| Best HMM Match : DUF1186 (HMM E-Value=2.4)                  107   1e-23
SB_1002| Best HMM Match : OTCace_N (HMM E-Value=0)                     29   3.1  
SB_48725| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_10757| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  

>SB_18612| Best HMM Match : DUF1186 (HMM E-Value=2.4)
          Length = 692

 Score =  107 bits (256), Expect = 1e-23
 Identities = 52/88 (59%), Positives = 59/88 (67%)
 Frame = +3

Query: 6   IDNCLPSFVELVLNRLTRKVKTSELRTMLLQVLIAILYSNPQLLFSILDKLQEAVPNASI 185
           +D  LP FVE  L RLTR+VK SELRTM LQV IA LY N  LL SILDKLQ      ++
Sbjct: 261 MDQWLPFFVEAALERLTREVKGSELRTMCLQVAIAALYYNSPLLLSILDKLQFPNSQEAV 320

Query: 186 TQHFIKQWIHDTDCFMGLHDRKLACSAF 269
           T  F  QW+HD DCF+GLHDRK+    F
Sbjct: 321 TAQFFSQWVHDADCFLGLHDRKMFILGF 348



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 21/50 (42%), Positives = 33/50 (66%)
 Frame = +1

Query: 613 IECYTTPLDDRDCPVDEYVKFKTTLSALSSTEPALYHALTSVLSEDQKKQ 762
           +E YTT +D  +  +DEY+ FKTTL AL S  P  Y ++ + L+ +QK++
Sbjct: 474 LEEYTTSIDGEN--MDEYIAFKTTLLALQSRNPEWYASMMNGLNNEQKQE 521



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +2

Query: 227 FHGAS*QKTCVLGICTLLDMGPQ-RPN-LDEFIPKLLPSCLVLFDGLKRAY 373
           F G   +K  +LG C L D   +  P  + +  P++LPS L++F GLKRAY
Sbjct: 335 FLGLHDRKMFILGFCALFDTPKEVLPQVISQVSPRILPSILLVFTGLKRAY 385


>SB_1002| Best HMM Match : OTCace_N (HMM E-Value=0)
          Length = 563

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 257 RKFSVMKPHETVSIVDPLFYEMLGNGRIRH 168
           R FS+     T S +DPLF  +  +GR+RH
Sbjct: 478 RPFSIATITLTQSTIDPLFISIQEHGRVRH 507


>SB_48725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -2

Query: 491 PGTRGSFPGCRLRHSTRSL-HQDP--GHLPLKMNHHQPRLGFRK 369
           PGTR   PG RL +    L +Q+P  G+      + +P LG+R+
Sbjct: 129 PGTRFGLPGTRLGYQEPDLGYQEPDLGYREPDSGYQEPDLGYRE 172


>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +3

Query: 123  NPQLLFSILDKLQEAVPNASITQHFIKQWIHDTDCFMGLHDRKLACSAFAHYWTWALSDP 302
            NP+  F  LD+L  ++ N+ I +H+ +     TDC          C  F H++ + +S+ 
Sbjct: 1047 NPEETFLFLDRLICSLENSEIIRHYNR----CTDCLKCKQPSSRVC--FDHHFNFGISNE 1100

Query: 303  T*MSSF 320
              ++SF
Sbjct: 1101 ADVTSF 1106


>SB_10757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +3

Query: 135 LFSILDKLQEAVPNASITQHFIKQWIHDTDCFMGLHDRKLACSAFAHYWTWALSDP 302
           L  + + LQ+      + Q+F  +     D +  +HD KL    FA +  W + DP
Sbjct: 124 LDELCEYLQKGQWENKLPQNFRHEESLYRDAYTKIHDSKLLVDWFASFILWVIYDP 179


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,867,229
Number of Sequences: 59808
Number of extensions: 467597
Number of successful extensions: 1123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)