Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00248
         (771 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70687-3|CAM35839.1|  332|Caenorhabditis elegans Hypothetical pr...    31   0.91 
U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF047656-7|AAC05108.2|  462|Caenorhabditis elegans Ligand-gated ...    30   1.6  
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z81146-10|CAB54274.2|  796|Caenorhabditis elegans Hypothetical p...    28   8.5  
Z81146-9|CAB03528.1|  817|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z81121-2|CAB54308.2|  796|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z81121-1|CAB03351.1|  817|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z70308-14|CAB54254.2|  796|Caenorhabditis elegans Hypothetical p...    28   8.5  
Z70308-13|CAA94353.1|  817|Caenorhabditis elegans Hypothetical p...    28   8.5  
AY090019-1|AAM09088.1|  796|Caenorhabditis elegans minibrain kin...    28   8.5  

>Z70687-3|CAM35839.1|  332|Caenorhabditis elegans Hypothetical
           protein T14C1.3 protein.
          Length = 332

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +1

Query: 634 LDDRDCPVDEYVKFKTTLSALSSTEPALYHALTSVLSEDQKK 759
           + D+   +DE VK+KT L  + S +  +YH +T  LS++  K
Sbjct: 252 ITDKIITLDEIVKYKTALQNIHSMQ-KMYHQITCNLSQEDLK 292


>U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical
           protein C18H9.8 protein.
          Length = 674

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 623 TQHPSTTGTVLSM-STLNSRPRSPLYRAPS 709
           T+H STT T +   ST +SRPR+   RAPS
Sbjct: 41  TKHASTTNTRMERPSTASSRPRTSTGRAPS 70


>AF047656-7|AAC05108.2|  462|Caenorhabditis elegans Ligand-gated ion
           channel protein 6 protein.
          Length = 462

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = -2

Query: 284 CPVVCKCRARKFSVMKPHETVSIVDPLFYEMLGNGRIR---HRLLKLVQDRKQQLRIAVQ 114
           C V+C+CR R+FS+ +   TVS VD   + +     ++   H+   LV+D  Q++ +  +
Sbjct: 343 CLVLCECRRRRFSISEA-STVSSVDVPEHAIQSFSILKSSLHQTAVLVRDTLQRMSLISE 401

Query: 113 DSYEDLK 93
           +    LK
Sbjct: 402 NQLLWLK 408


>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical protein
            C46C2.1b protein.
          Length = 1677

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 449  STRSLHQDPGHLPLKMNHHQPRLGFRKLVSNHQTAP-NRTAA 327
            S  S H+D    P + +HHQP       + NH   P N T+A
Sbjct: 1599 SVSSRHRDNQSAPPRHHHHQPHPPHHPHLQNHYHPPQNHTSA 1640


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical protein
            C46C2.1a protein.
          Length = 1838

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 449  STRSLHQDPGHLPLKMNHHQPRLGFRKLVSNHQTAP-NRTAA 327
            S  S H+D    P + +HHQP       + NH   P N T+A
Sbjct: 1760 SVSSRHRDNQSAPPRHHHHQPHPPHHPHLQNHYHPPQNHTSA 1801


>Z81146-10|CAB54274.2|  796|Caenorhabditis elegans Hypothetical
           protein F49E11.1c protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +3

Query: 57  RKVKTSELRTMLLQVLIAILYSNPQLLFSILDKLQEAV-PNASITQHFIKQW---IHDTD 224
           R++  S+     LQ   + LYSNPQ   S L   Q+AV PN +  Q   +Q     H T 
Sbjct: 199 RRLGGSQQHLAPLQQTASSLYSNPQSSSSQLLGQQQAVRPNYAYQQSLPRQQHINSHQTQ 258

Query: 225 CFMG 236
            F G
Sbjct: 259 AFFG 262


>Z81146-9|CAB03528.1|  817|Caenorhabditis elegans Hypothetical
           protein F49E11.1b protein.
          Length = 817

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +3

Query: 57  RKVKTSELRTMLLQVLIAILYSNPQLLFSILDKLQEAV-PNASITQHFIKQW---IHDTD 224
           R++  S+     LQ   + LYSNPQ   S L   Q+AV PN +  Q   +Q     H T 
Sbjct: 199 RRLGGSQQHLAPLQQTASSLYSNPQSSSSQLLGQQQAVRPNYAYQQSLPRQQHINSHQTQ 258

Query: 225 CFMG 236
            F G
Sbjct: 259 AFFG 262


>Z81121-2|CAB54308.2|  796|Caenorhabditis elegans Hypothetical
           protein F49E11.1c protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +3

Query: 57  RKVKTSELRTMLLQVLIAILYSNPQLLFSILDKLQEAV-PNASITQHFIKQW---IHDTD 224
           R++  S+     LQ   + LYSNPQ   S L   Q+AV PN +  Q   +Q     H T 
Sbjct: 199 RRLGGSQQHLAPLQQTASSLYSNPQSSSSQLLGQQQAVRPNYAYQQSLPRQQHINSHQTQ 258

Query: 225 CFMG 236
            F G
Sbjct: 259 AFFG 262


>Z81121-1|CAB03351.1|  817|Caenorhabditis elegans Hypothetical
           protein F49E11.1b protein.
          Length = 817

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +3

Query: 57  RKVKTSELRTMLLQVLIAILYSNPQLLFSILDKLQEAV-PNASITQHFIKQW---IHDTD 224
           R++  S+     LQ   + LYSNPQ   S L   Q+AV PN +  Q   +Q     H T 
Sbjct: 199 RRLGGSQQHLAPLQQTASSLYSNPQSSSSQLLGQQQAVRPNYAYQQSLPRQQHINSHQTQ 258

Query: 225 CFMG 236
            F G
Sbjct: 259 AFFG 262


>Z70308-14|CAB54254.2|  796|Caenorhabditis elegans Hypothetical
           protein F49E11.1c protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +3

Query: 57  RKVKTSELRTMLLQVLIAILYSNPQLLFSILDKLQEAV-PNASITQHFIKQW---IHDTD 224
           R++  S+     LQ   + LYSNPQ   S L   Q+AV PN +  Q   +Q     H T 
Sbjct: 199 RRLGGSQQHLAPLQQTASSLYSNPQSSSSQLLGQQQAVRPNYAYQQSLPRQQHINSHQTQ 258

Query: 225 CFMG 236
            F G
Sbjct: 259 AFFG 262


>Z70308-13|CAA94353.1|  817|Caenorhabditis elegans Hypothetical
           protein F49E11.1b protein.
          Length = 817

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +3

Query: 57  RKVKTSELRTMLLQVLIAILYSNPQLLFSILDKLQEAV-PNASITQHFIKQW---IHDTD 224
           R++  S+     LQ   + LYSNPQ   S L   Q+AV PN +  Q   +Q     H T 
Sbjct: 199 RRLGGSQQHLAPLQQTASSLYSNPQSSSSQLLGQQQAVRPNYAYQQSLPRQQHINSHQTQ 258

Query: 225 CFMG 236
            F G
Sbjct: 259 AFFG 262


>AY090019-1|AAM09088.1|  796|Caenorhabditis elegans minibrain kinase
           2 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +3

Query: 57  RKVKTSELRTMLLQVLIAILYSNPQLLFSILDKLQEAV-PNASITQHFIKQW---IHDTD 224
           R++  S+     LQ   + LYSNPQ   S L   Q+AV PN +  Q   +Q     H T 
Sbjct: 199 RRLGGSQQHLAPLQQTASSLYSNPQSSSSQLLGQQQAVRPNYAYQQSLPRQQHINSHQTQ 258

Query: 225 CFMG 236
            F G
Sbjct: 259 AFFG 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,591,433
Number of Sequences: 27780
Number of extensions: 334353
Number of successful extensions: 767
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)