Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00248
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    26   0.45 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.4  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   3.1  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 314 THLGWVAEGPCPVVCKCRARKF 249
           T LGW+  G  PV+  C +R F
Sbjct: 376 TWLGWINSGMNPVIYACWSRDF 397


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 117 YSNPQLLFSILDKLQEAVPNASITQHF 197
           + +P+   S+  KLQ+ +PN+ I   +
Sbjct: 156 WHSPEAHISVAQKLQKEIPNSIILDQY 182


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 132 LLFSILDKLQEAVPNASITQHFIKQWIHDTDCFM 233
           L F    K+QE +    I++  IK+++ +  CF+
Sbjct: 46  LTFKDFIKMQELLQEEDISEGNIKKYLTNYSCFI 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,692
Number of Sequences: 438
Number of extensions: 4130
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)