Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00246
(484 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 91 3e-19
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524... 76 1e-14
03_02_0758 + 10954268-10954841,10955988-10957145,10957176-109572... 64 4e-11
08_01_0397 - 3509186-3510291,3510322-3512335 53 1e-07
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 53 1e-07
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 51 6e-07
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310... 50 7e-07
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 49 2e-06
02_01_0381 - 2764331-2764342,2768966-2769907 42 3e-04
02_01_0765 - 5694535-5694644,5695039-5696550,5697229-5697390,569... 40 0.001
06_03_1255 + 28780181-28781172,28782065-28782932 38 0.004
07_03_1500 + 27001842-27002058,27002144-27002283,27002458-270025... 36 0.013
06_03_0674 + 23422004-23422552,23423295-23423369,23424360-234244... 35 0.030
03_05_0865 - 28365430-28367640 34 0.052
03_06_0365 - 33399422-33399925,33400470-33400583,33400762-334009... 32 0.28
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 30 0.85
11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973... 29 2.6
08_02_0671 - 19890187-19890295,19891186-19891320,19891551-198919... 29 2.6
07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 28 3.4
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093 28 3.4
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 28 3.4
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 28 4.5
11_06_0715 + 26552962-26553510,26553578-26555746 27 6.0
09_04_0706 + 19627024-19627380,19629945-19629976,19630657-196307... 27 7.9
06_01_0724 + 5299278-5299542,5299690-5299950,5300246-5300351,530... 27 7.9
04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784 27 7.9
02_04_0585 - 24088344-24089366,24089833-24090075,24090305-240906... 27 7.9
>01_06_1758 -
39681942-39682030,39682115-39682345,39682643-39682679,
39683604-39683835,39683937-39684022,39684126-39684218,
39684302-39684465,39684541-39684702,39684783-39684962,
39685079-39685515,39685614-39685669
Length = 588
Score = 91.5 bits (217), Expect = 3e-19
Identities = 40/81 (49%), Positives = 53/81 (65%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 420
P+ F SL PF KNFY P V S +V +YR + ++TV G +V P++YF+EANFPD
Sbjct: 106 PKPDFRSLIPFEKNFYVECPAVQAMSDMDVSQYRRQRDITVEGHDVPKPVRYFQEANFPD 165
Query: 421 YVQQGVKTMGYKEPTPIQAQG 483
Y Q + G+ EPTPIQ+QG
Sbjct: 166 YCMQAIAKSGFVEPTPIQSQG 186
>01_01_0682 -
5244805-5244919,5246468-5246613,5246813-5246994,
5247069-5247295,5247382-5247467,5247564-5247656,
5247964-5248118,5248407-5248490,5248589-5248768,
5249587-5249828,5249927-5249982
Length = 521
Score = 76.2 bits (179), Expect = 1e-14
Identities = 34/74 (45%), Positives = 46/74 (62%)
Frame = +1
Query: 262 LQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 441
L F KNFY P+V + EVE YR + E+TV G +V P++ F + FP+YV Q +
Sbjct: 48 LPRFEKNFYVESPSVAGMTEEEVEAYRRRREITVEGRDVPKPVREFRDVGFPEYVLQEIT 107
Query: 442 TMGYKEPTPIQAQG 483
G+ EPTPIQ+QG
Sbjct: 108 KAGFVEPTPIQSQG 121
>03_02_0758 +
10954268-10954841,10955988-10957145,10957176-10957216,
10957412-10957448,10957534-10957954,10958201-10958234
Length = 754
Score = 64.5 bits (150), Expect = 4e-11
Identities = 28/75 (37%), Positives = 42/75 (56%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +PFNK+FY+ P+V S EV +Y + VSG +V PI+ F + FP +
Sbjct: 174 IEYEPFNKDFYEEKPSVSGMSEQEVADYMKSLAIRVSGFDVPRPIKSFADCGFPVQLMNA 233
Query: 436 VKTMGYKEPTPIQAQ 480
+ GY++PT IQ Q
Sbjct: 234 IAKQGYEKPTTIQCQ 248
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 52.8 bits (121), Expect = 1e-07
Identities = 25/75 (33%), Positives = 41/75 (54%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ QPF KNFY + K + EV YR + E+ V G +V PI+ + ++ +
Sbjct: 379 IDYQPFRKNFYIEVKDITKMAAEEVAAYRKQLELKVHGKDVPKPIKTWVQSGLTSKLLDT 438
Query: 436 VKTMGYKEPTPIQAQ 480
+K +G+++P IQAQ
Sbjct: 439 IKKLGFEKPMSIQAQ 453
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 52.8 bits (121), Expect = 1e-07
Identities = 23/50 (46%), Positives = 31/50 (62%)
Frame = +1
Query: 331 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 480
E YR++HE+TV G V PI FE FP + + ++ G+ PTPIQAQ
Sbjct: 130 EAYRHRHEITVVGDNVPAPITSFETGGFPPEILKEIQRAGFSSPTPIQAQ 179
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 50.8 bits (116), Expect = 6e-07
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +1
Query: 331 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 480
E YR KHE+T+ G E P F+ FP + + V+ G+ PTPIQAQ
Sbjct: 160 EAYRAKHEITIVGNEAPAPFMTFQSTGFPPEILREVQQAGFSAPTPIQAQ 209
>08_01_0353 -
3107628-3107774,3108177-3108213,3108248-3109164,
3109210-3110952
Length = 947
Score = 50.4 bits (115), Expect = 7e-07
Identities = 24/75 (32%), Positives = 39/75 (52%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ QPF KN Y + + EV YR E+ V G +V PI+ + ++ +
Sbjct: 240 IEYQPFRKNLYIEVKDITMMTGEEVATYRKNLELKVHGKDVPKPIKTWVQSGLTSKLLDT 299
Query: 436 VKTMGYKEPTPIQAQ 480
+K +G+++P PIQAQ
Sbjct: 300 IKKLGFEKPMPIQAQ 314
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 49.2 bits (112), Expect = 2e-06
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +1
Query: 259 SLQPFNKNFYDPH-PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
S++P ++ F P+ P++ + YR HEVT G V P FE FP + Q
Sbjct: 564 SMRPPSRMFAPPNFPSIAS-----ADAYRQHHEVTAVGENVPPPFMTFEATGFPPEILQE 618
Query: 436 VKTMGYKEPTPIQAQ 480
+ G+ PTPIQAQ
Sbjct: 619 IHAAGFLNPTPIQAQ 633
>02_01_0381 - 2764331-2764342,2768966-2769907
Length = 317
Score = 41.5 bits (93), Expect = 3e-04
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 298 PTVLKRSPY-EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
P L+R P + +E R K + V G +V P + F + P+ + + ++ G +PTPIQ
Sbjct: 150 PLRLRRMPRAKADELRRKWHILVDGDDVPPPARDFRDLRLPEPMLRKLREKGIVQPTPIQ 209
Query: 475 AQG 483
QG
Sbjct: 210 VQG 212
>02_01_0765 -
5694535-5694644,5695039-5696550,5697229-5697390,
5698015-5698057
Length = 608
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +1
Query: 325 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 480
++ R+K ++ V G +V +PI F + P+ + ++ GY PTP+Q Q
Sbjct: 160 QIASLRSKLDICVKGEDVPDPIMCFSSSGLPEKLVLNLEAAGYVMPTPVQMQ 211
>06_03_1255 + 28780181-28781172,28782065-28782932
Length = 619
Score = 37.9 bits (84), Expect = 0.004
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 298 PTVLKRSPYE-VEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
P L+R P + R + V G +V P + F + P+ + + ++ G ++PTPIQ
Sbjct: 141 PLRLRRMPRSRADALRRSWHILVDGDDVPPPSRSFGDLRLPEPILRALRGKGIEKPTPIQ 200
Query: 475 AQG 483
QG
Sbjct: 201 VQG 203
>07_03_1500 +
27001842-27002058,27002144-27002283,27002458-27002549,
27002680-27002776,27002871-27002951,27003031-27003263,
27003876-27004070,27004149-27004239,27004324-27004446,
27004542-27004692,27005060-27005262
Length = 540
Score = 36.3 bits (80), Expect = 0.013
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +1
Query: 340 RNKHEVTVSGVEVHNPIQYFEEA----NFPDYVQQGVKTMGYKEPTPIQAQ 480
R K ++ +SG V P++ FEE Y+ + +G++EPTPIQ Q
Sbjct: 125 RKKFDIHISGQNVPAPLENFEELVSRYGCDSYLVGNLSKLGFQEPTPIQRQ 175
>06_03_0674 +
23422004-23422552,23423295-23423369,23424360-23424443,
23424749-23424991,23425348-23425515,23425608-23425727,
23426372-23427016
Length = 627
Score = 35.1 bits (77), Expect = 0.030
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
V VSG +V P FE A + V + V GY+ PTP+Q
Sbjct: 72 VEVSGEDVPPPADGFEAAGLVEAVLRNVARCGYESPTPVQ 111
>03_05_0865 - 28365430-28367640
Length = 736
Score = 34.3 bits (75), Expect = 0.052
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 337 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
+R ++ G +V P++ + E+ + + V+ GYKEP+PIQ
Sbjct: 297 FREDFNISYKGSKVPRPMRKWSESKLGTELLRAVEKAGYKEPSPIQ 342
>03_06_0365 -
33399422-33399925,33400470-33400583,33400762-33400929,
33401305-33401547,33402148-33402231,33402323-33403098,
33404423-33404636
Length = 700
Score = 31.9 bits (69), Expect = 0.28
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
V SG +V P+ F E + D + + ++ Y +PTP+Q
Sbjct: 225 VETSGHDVPPPVNTFAEIDLGDALNENIRRCKYVKPTPVQ 264
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
V SG +V P F E + D + + ++ Y +PTP+Q
Sbjct: 311 VETSGHDVPPPANTFAEIDLGDALNENIRRCKYVKPTPVQ 350
>11_06_0300 +
22095396-22096145,22096261-22096344,22097062-22097304,
22098535-22098702,22098895-22099008,22099378-22099890
Length = 623
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
V SG EV P+ F E + + ++ Y PTP+Q
Sbjct: 143 VETSGREVPPPVGTFAEIDLGQALNDNIRRCKYVRPTPVQ 182
>08_02_0671 -
19890187-19890295,19891186-19891320,19891551-19891917,
19892909-19893044,19894924-19894974,19895053-19895134,
19895801-19895853,19895989-19896065,19896234-19896273,
19897666-19897767,19897989-19898031,19898127-19899288,
19899902-19900271
Length = 908
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQ 474
FE + V +GV+ GY+ PTPIQ
Sbjct: 28 FESMGLCEEVYRGVRHKGYRVPTPIQ 53
>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
Length = 130
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 268 VGVKQIPIWASHVVPSREF 212
VGVK+I W + ++PSR+F
Sbjct: 81 VGVKEIESWTARLLPSRQF 99
>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
Length = 1040
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 316 SPYEVEEYRNKHEVTVSGVEVHN 384
SP +EE N E+ V GV++HN
Sbjct: 431 SPQMIEEMNNVRELNVKGVKLHN 453
>02_03_0219 +
16541350-16541482,16541605-16541765,16541863-16541940,
16543176-16543445
Length = 213
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 268 VGVKQIPIWASHVVPSREF 212
VGVK+I W + ++PSR+F
Sbjct: 81 VGVKEIESWTARLLPSRQF 99
>08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 233 MRRPDWDLFHSNLSTKTFMIHILQFSKDHH 322
MR PD D S K F IH+ S DHH
Sbjct: 1226 MRSPDDDKPTSWSDQKVFEIHVYPSSNDHH 1255
>11_06_0715 + 26552962-26553510,26553578-26555746
Length = 905
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 429 LHIIRKIGFFKVLNRIMNLNATYSYLVFISILFDF 325
LH+I G +V + I+ L T YL F+ I +DF
Sbjct: 847 LHLINLRGMTEVPSDIIFLLPTLKYLYFLEITWDF 881
>09_04_0706 +
19627024-19627380,19629945-19629976,19630657-19630751,
19632116-19632281,19632881-19632938,19633014-19633061,
19633274-19633464,19633580-19633702,19635174-19635289,
19635841-19635924,19636009-19636259,19636438-19636647
Length = 576
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = -3
Query: 239 VACCALQRILFSHQSLQILQIYCHRCQTETNYRRICC 129
VAC Q +LF L +YC C T + C
Sbjct: 404 VACLICQELLFDPSVLNCGHVYCMPCLTSVGGEELEC 440
>06_01_0724 +
5299278-5299542,5299690-5299950,5300246-5300351,
5300633-5300697,5300759-5301233,5302239-5302347,
5302432-5302710,5303025-5303231,5303319-5303468,
5304164-5304277
Length = 676
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 286 YDPHPT-VLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYFE 402
+DPHP K +P V NK+ T+ + N IQYF+
Sbjct: 244 HDPHPRWTCKCNPSRVSFSVSNKNPCTLHQARLQNLIQYFQ 284
>04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784
Length = 1035
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 316 SPYEVEEYRNKHEVTVSGVEVHN 384
SP +EE N E+ V GV+ HN
Sbjct: 431 SPQMIEEMNNVRELNVEGVKPHN 453
>02_04_0585 -
24088344-24089366,24089833-24090075,24090305-24090655,
24090736-24090823,24091178-24091275,24091813-24092025,
24092150-24092245,24093124-24093195,24093909-24094067
Length = 780
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 108 VVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGTTCDAQIGICF 260
+ P + +I G+ T I L+D+ +L+ +K LE T C +CF
Sbjct: 218 LTPEKFDLLKGQLIEAGITTADI-LKDVISLIFEKAVLEPTFCPMYAQLCF 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,573,121
Number of Sequences: 37544
Number of extensions: 214018
Number of successful extensions: 573
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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