Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00246
(484 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 1e-10
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 60 7e-10
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 50 8e-07
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 2e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 45 4e-05
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 44 9e-05
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 43 2e-04
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.031
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 35 0.031
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.22
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 30 0.87
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 29 2.0
SB_15636| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 29 2.7
SB_41143| Best HMM Match : Tropomodulin (HMM E-Value=0.09) 29 2.7
SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011) 29 2.7
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 4.6
SB_44832| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_18459| Best HMM Match : Toxin_18 (HMM E-Value=2.1) 27 8.1
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 63.3 bits (147), Expect = 1e-10
Identities = 27/80 (33%), Positives = 42/80 (52%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 420
P + +PFNKNFY+ HP + K+S E+++ R K + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 421 YVQQGVKTMGYKEPTPIQAQ 480
+ ++ + Y +PT IQ Q
Sbjct: 527 QMMASIRKLEYTQPTQIQCQ 546
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 60.5 bits (140), Expect = 7e-10
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = +1
Query: 313 RSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 480
R +EV+ YR ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 50.4 bits (115), Expect = 8e-07
Identities = 22/65 (33%), Positives = 36/65 (55%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 465
Y HPT+ + +V++ R+K E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 466 PIQAQ 480
PIQ Q
Sbjct: 221 PIQMQ 225
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 48.8 bits (111), Expect = 2e-06
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYR-NKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 432
V QPF K+FY P + K +P E +E+R + + V G P++ + + +
Sbjct: 59 VVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKILD 118
Query: 433 GVKTMGYKEPTPIQAQ 480
+K Y++PTPIQAQ
Sbjct: 119 VLKKNSYEKPTPIQAQ 134
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Frame = +1
Query: 325 EVEEYRNKHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQ 480
++ +R++ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQ 192
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 43.6 bits (98), Expect = 9e-05
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +1
Query: 337 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 480
+R ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQ 130
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +1
Query: 271 FNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 450
F ++YD + V + S V+E R K+ + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 451 YKEPTPIQAQ 480
++ PTPIQ Q
Sbjct: 92 FQVPTPIQMQ 101
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 35.1 bits (77), Expect = 0.031
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +1
Query: 331 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q
Sbjct: 692 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQ 738
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 35.1 bits (77), Expect = 0.031
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +1
Query: 331 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q
Sbjct: 115 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQ 161
>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 32.3 bits (70), Expect = 0.22
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 239 VACCALQRILFSHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGY 93
+ACC + H L YC RC T CCLLQ++++ ++G+
Sbjct: 474 IACCYAS--VSQHLQQPSLAAYC-RCITILTTAIACCLLQVYHNTYNGH 519
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 30.3 bits (65), Expect = 0.87
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 319 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 450
P+E + + KH++ V+ VE + +Q +E F + ++Q VK G
Sbjct: 252 PFEPPKPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQ-VKDTG 294
>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 29
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -1
Query: 268 VGVKQIPIWASHVVPSREF 212
VGV+ I WAS+++PSR+F
Sbjct: 10 VGVRDIEQWASNLLPSRQF 28
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 361 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
VSG I F E F + + + GY+ PTP+Q
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQ 506
>SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1570
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -3
Query: 230 CALQRILFSHQSLQILQIYCHRCQTETNYRRI---CCLLQIWNHRFHGY 93
CAL R + ++SLQ+L I + +E R I C Q NH FH Y
Sbjct: 34 CALARSVAKNRSLQVLTITYNNI-SEVGKRAIIDACAKSQSLNHLFHEY 81
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 331 EEYRNK-HEVTVSGVEVHNPIQYFEEANFPDY 423
EE NK H++ + + +HNP YFE+ + DY
Sbjct: 234 EEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_15636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1311
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = -3
Query: 230 CALQRILFSHQSLQILQIYCHRCQTETNYRRI---CCLLQIWNHRFH 99
C L R + H+SLQ+L I H +E R I C Q NH FH
Sbjct: 888 CKLARSVGKHKSLQVLTI-THNNISEKGKRAIIEACAESQSLNHLFH 933
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +1
Query: 346 KHEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
KHEV V + +P+ + FEE +++GV MG+ +P+ IQ
Sbjct: 85 KHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQ 130
>SB_41143| Best HMM Match : Tropomodulin (HMM E-Value=0.09)
Length = 771
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = -3
Query: 230 CALQRILFSHQSLQILQIYCHRCQTETNYRRI---CCLLQIWNHRFH 99
C L R + H+SLQ+L I H +E R I C Q NH FH
Sbjct: 658 CKLARSVGKHKSLQVLTI-THNNISEKGKRAIIEACAESQSLNHLFH 703
>SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)
Length = 1199
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 230 NMRRPDWDLFHSNLSTKTFMIHILQFSKD 316
N RR WD FHSN+S + H+ F D
Sbjct: 769 NKRR--WDSFHSNVSADSGSAHMFDFDTD 795
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 388 IQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
I FE+ + + + V GYK+PTP+Q
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQ 902
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 27.9 bits (59), Expect = 4.6
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +3
Query: 84 IGIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGTTCDAQIGICFT 263
+ +IAV + P++ EA I GL V I ++D EAL K NS+ +C + C T
Sbjct: 1258 VDVIAVG-IGPDVNEAELLEIAEGGLDHV-IRVDDYEALATKLNSILALSCPSGQETCTT 1315
>SB_44832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 278 LLKGWSETNPNLGVACCAL 222
LLKGW TN N +AC A+
Sbjct: 150 LLKGWGATNFNHAMACAAV 168
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +1
Query: 373 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQA 477
++H P++ + FP Y + Y P P QA
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQA 40
>SB_18459| Best HMM Match : Toxin_18 (HMM E-Value=2.1)
Length = 150
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 481 LELEWASVLCNPLSLHLVAHNQENWLLQSIE*DYEPQR 368
L W S+ NP +LH +E+W Q I Y P R
Sbjct: 42 LRTAWYSLHSNPTTLHRCRILREDWRSQHIR-QYSPHR 78
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,668,934
Number of Sequences: 59808
Number of extensions: 261620
Number of successful extensions: 857
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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