Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00246
(484 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 54 7e-08
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 51 4e-07
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 46 1e-05
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 42 2e-04
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 40 0.001
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 39 0.002
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 39 0.002
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 39 0.002
U41107-2|AAK73880.1| 111|Caenorhabditis elegans Temporarily ass... 32 0.25
U93847-1|AAB58269.1| 760|Caenorhabditis elegans elongation fact... 31 0.58
U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation fact... 31 0.58
U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation fact... 31 0.58
U10414-6|AAN63384.1| 760|Caenorhabditis elegans Elongation fact... 31 0.58
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 30 0.77
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 30 0.77
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 30 0.77
AC091124-2|AAK27879.2| 1114|Caenorhabditis elegans Hypothetical ... 30 1.0
Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical p... 29 1.3
Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z81103-2|CAB03213.1| 403|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z81103-1|CAB03208.2| 457|Caenorhabditis elegans Hypothetical pr... 28 4.1
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 27 5.4
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 27 5.4
AF016427-5|AAB65357.2| 273|Caenorhabditis elegans Ground-like (... 27 7.1
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 53.6 bits (123), Expect = 7e-08
Identities = 23/48 (47%), Positives = 31/48 (64%)
Frame = +1
Query: 337 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 480
+R +++ G V P++ +EEA FPD V Q VK +GY EPTPIQ Q
Sbjct: 283 FREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQ 330
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 51.2 bits (117), Expect = 4e-07
Identities = 22/74 (29%), Positives = 39/74 (52%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ Q FNKNFY+ H + + +V +N + V G++ P+ F +F + +
Sbjct: 220 IQYQKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKLLMEA 279
Query: 436 VKTMGYKEPTPIQA 477
++ Y++PTPIQA
Sbjct: 280 IRKSEYEQPTPIQA 293
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 46.0 bits (104), Expect = 1e-05
Identities = 22/73 (30%), Positives = 42/73 (57%)
Frame = +1
Query: 259 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 438
+L P K+FY + V +R YE++++ + ++VT+ G V P+ F EA P + + +
Sbjct: 86 NLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAPLPGQIHE-L 144
Query: 439 KTMGYKEPTPIQA 477
+++PT IQ+
Sbjct: 145 LYGKFQKPTVIQS 157
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 432
V + F KNFY + + + EV+ YR + + +TV G++ PI+ + + +
Sbjct: 258 VYYRKFKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQCGVNLKMMN 317
Query: 433 GVKTMGYKEPTPIQAQ 480
+K Y +PT IQAQ
Sbjct: 318 VLKKFEYSKPTSIQAQ 333
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 39.9 bits (89), Expect = 0.001
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
V +G +V PI F + + +++++ +KT GY PTP+Q
Sbjct: 154 VEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQ 193
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +1
Query: 331 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
++Y N V VSG V I++F EA F V + V GY +PTP+Q
Sbjct: 120 DKYENI-PVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQ 166
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +1
Query: 331 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
++Y N V VSG V I++F EA F V + V GY +PTP+Q
Sbjct: 104 DKYENI-PVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQ 150
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +1
Query: 331 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
++Y N V VSG V I++F EA F V + V GY +PTP+Q
Sbjct: 101 DKYENI-PVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQ 147
>U41107-2|AAK73880.1| 111|Caenorhabditis elegans Temporarily
assigned gene nameprotein 234 protein.
Length = 111
Score = 31.9 bits (69), Expect = 0.25
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -3
Query: 350 CLFLYSSTSYGDLLRTVGCGS*KFLLKGWSETNPNLGVACC 228
C+ ++ + SY ++ T GCG+ + G S G CC
Sbjct: 48 CMKIFQTGSYNNIYATYGCGTNQCSSSGCSTNKNGYGTCCC 88
>U93847-1|AAB58269.1| 760|Caenorhabditis elegans elongation
factor-2 kinase EFK-1B isoform protein.
Length = 760
Score = 30.7 bits (66), Expect = 0.58
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = -1
Query: 271 KVGVKQIPIWASHVVPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAI 92
++G K ++ +H + + P + + KSI + E S G T ++
Sbjct: 639 EMGDKGAMLYMAHAYETGQHLGPNRRTDYKKSIDWYQRVVGFQEEEELDSDCGKTTFSSF 698
Query: 91 IPITRHDYFSDLVEDVYLNYGFFLTQ 14
P+TRH+ + + E +Y G+ L Q
Sbjct: 699 APLTRHEILAKMAE-MYKEGGYGLNQ 723
>U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation
factor-2 kinase EFK-1A isoform protein.
Length = 768
Score = 30.7 bits (66), Expect = 0.58
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = -1
Query: 271 KVGVKQIPIWASHVVPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAI 92
++G K ++ +H + + P + + KSI + E S G T ++
Sbjct: 647 EMGDKGAMLYMAHAYETGQHLGPNRRTDYKKSIDWYQRVVGFQEEEELDSDCGKTTFSSF 706
Query: 91 IPITRHDYFSDLVEDVYLNYGFFLTQ 14
P+TRH+ + + E +Y G+ L Q
Sbjct: 707 APLTRHEILAKMAE-MYKEGGYGLNQ 731
>U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation factor
kinase protein1, isoform a protein.
Length = 768
Score = 30.7 bits (66), Expect = 0.58
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = -1
Query: 271 KVGVKQIPIWASHVVPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAI 92
++G K ++ +H + + P + + KSI + E S G T ++
Sbjct: 647 EMGDKGAMLYMAHAYETGQHLGPNRRTDYKKSIDWYQRVVGFQEEEELDSDCGKTTFSSF 706
Query: 91 IPITRHDYFSDLVEDVYLNYGFFLTQ 14
P+TRH+ + + E +Y G+ L Q
Sbjct: 707 APLTRHEILAKMAE-MYKEGGYGLNQ 731
>U10414-6|AAN63384.1| 760|Caenorhabditis elegans Elongation factor
kinase protein1, isoform b protein.
Length = 760
Score = 30.7 bits (66), Expect = 0.58
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = -1
Query: 271 KVGVKQIPIWASHVVPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAI 92
++G K ++ +H + + P + + KSI + E S G T ++
Sbjct: 639 EMGDKGAMLYMAHAYETGQHLGPNRRTDYKKSIDWYQRVVGFQEEEELDSDCGKTTFSSF 698
Query: 91 IPITRHDYFSDLVEDVYLNYGFFLTQ 14
P+TRH+ + + E +Y G+ L Q
Sbjct: 699 APLTRHEILAKMAE-MYKEGGYGLNQ 723
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 30.3 bits (65), Expect = 0.77
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
P + F EAN + +Q+ V GY + TPIQ
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQ 368
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 30.3 bits (65), Expect = 0.77
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
P + F EAN + +Q+ V GY + TPIQ
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQ 368
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 30.3 bits (65), Expect = 0.77
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
P + F EAN + +Q+ V GY + TPIQ
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQ 368
>AC091124-2|AAK27879.2| 1114|Caenorhabditis elegans Hypothetical
protein Y47A7.1 protein.
Length = 1114
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 13 PASERIHSLNKHLQLNPKNNHVW 81
PAS ++H L++ LQLN N+ W
Sbjct: 773 PASHQLHCLSRALQLNKANDSAW 795
>Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical
protein F08A8.8 protein.
Length = 222
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 99 VETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKN 215
+ETV+ LE N +RL A VA E LE++ GK N
Sbjct: 71 IETVILALEAGMNLEDVRLEFAHVATREEILESVFGKLN 109
>Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical
protein T20D3.5b protein.
Length = 312
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 154 RRIIAEFVASSKFGTTVSTAIIPI 83
+++I +FVA S G T+STA P+
Sbjct: 220 QQLIGDFVAGSLLGATISTAFFPL 243
>Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical
protein T20D3.5a protein.
Length = 221
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 154 RRIIAEFVASSKFGTTVSTAIIPI 83
+++I +FVA S G T+STA P+
Sbjct: 129 QQLIGDFVAGSLLGATISTAFFPL 152
>Z81103-2|CAB03213.1| 403|Caenorhabditis elegans Hypothetical
protein M04G12.1b protein.
Length = 403
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAN---FPDYVQQGVKTMG 450
P PTVL SP+ V N +V H + +AN D +QQ ++++G
Sbjct: 144 PQPTVLPTSPFHVPTMNNLEQVL-----THQRLLQMTQANPRAVDDLIQQSLRSLG 194
>Z81103-1|CAB03208.2| 457|Caenorhabditis elegans Hypothetical
protein M04G12.1a protein.
Length = 457
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAN---FPDYVQQGVKTMG 450
P PTVL SP+ V N +V H + +AN D +QQ ++++G
Sbjct: 171 PQPTVLPTSPFHVPTMNNLEQVL-----THQRLLQMTQANPRAVDDLIQQSLRSLG 221
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
P + F +++ P +++ V+ GY TPIQ
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQ 325
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
P + F +++ P +++ V+ GY TPIQ
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQ 325
>AF016427-5|AAB65357.2| 273|Caenorhabditis elegans Ground-like (grd
related) protein13 protein.
Length = 273
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 265 QPFNK-NFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQ 393
QP++ +F P PT++++ PY Y H + + + HN Q
Sbjct: 63 QPYSPVSFRPPPPTIIQQQPY----YSVPHPIPIQTQQFHNSYQ 102
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,287,729
Number of Sequences: 27780
Number of extensions: 204559
Number of successful extensions: 751
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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