Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00246
         (484 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       43   2e-06
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   5.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   5.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   5.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   5.2  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 42.7 bits (96), Expect = 2e-06
 Identities = 19/41 (46%), Positives = 25/41 (60%)
 Frame = +1

Query: 352 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
           +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQ 223


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -1

Query: 250 PIWASHVVPSREFFFP 203
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -1

Query: 250 PIWASHVVPSREFFFP 203
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +1

Query: 310 KRSPYEVEEYRNKHEVTV 363
           K  P++V+++R+K  VT+
Sbjct: 64  KNYPFDVDQWRDKTFVTI 81


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -3

Query: 158 TETNYRRICCLLQIWNHRFHGYYSN 84
           T  N RR    ++ W H F   Y N
Sbjct: 416 TVENNRRNPWFVEFWEHHFQCRYPN 440


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 310 KRSPYEVEEYRNKHEVTV 363
           K  P++V+ +R+K  VT+
Sbjct: 69  KNYPFDVDRWRDKTFVTI 86


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 379 HNPIQYFEEANFPDYVQQGVKTMG 450
           H+P QY        + Q G  TMG
Sbjct: 321 HHPSQYHPHRGSSPHHQHGNHTMG 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,464
Number of Sequences: 438
Number of extensions: 2462
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)