Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00246
(484 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 85 2e-17
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 79 1e-15
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 79 1e-15
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 62 1e-10
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 54 4e-08
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 54 4e-08
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 54 4e-08
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 54 5e-08
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 54 7e-08
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 51 5e-07
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 46 2e-05
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 42 3e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 35 0.025
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 35 0.033
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 35 0.033
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 33 0.10
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 31 0.31
At2g25460.1 68415.m03049 expressed protein 30 0.71
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 30 0.71
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 29 1.2
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 29 1.6
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 29 2.2
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 29 2.2
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 29 2.2
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 2.9
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 2.9
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 28 3.8
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 27 5.0
At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con... 27 5.0
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 27 5.0
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 27 5.0
At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR... 27 8.8
At2g33420.1 68415.m04096 expressed protein 27 8.8
At1g61240.2 68414.m06901 expressed protein contains Pfam profile... 27 8.8
At1g61240.1 68414.m06900 expressed protein contains Pfam profile... 27 8.8
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 27 8.8
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 85.0 bits (201), Expect = 2e-17
Identities = 38/80 (47%), Positives = 49/80 (61%)
Frame = +1
Query: 244 RLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 423
+L L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDY
Sbjct: 50 KLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDY 109
Query: 424 VQQGVKTMGYKEPTPIQAQG 483
V + VK G+ EPTPIQ+QG
Sbjct: 110 VLEEVKKAGFTEPTPIQSQG 129
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 79.4 bits (187), Expect = 1e-15
Identities = 34/81 (41%), Positives = 52/81 (64%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 420
P+ F +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 421 YVQQGVKTMGYKEPTPIQAQG 483
+ + + +G+ EPTPIQAQG
Sbjct: 175 NILEAIAKLGFTEPTPIQAQG 195
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 79.4 bits (187), Expect = 1e-15
Identities = 34/81 (41%), Positives = 52/81 (64%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 420
P+ F +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 421 YVQQGVKTMGYKEPTPIQAQG 483
+ + + +G+ EPTPIQAQG
Sbjct: 175 NILEAIAKLGFTEPTPIQAQG 195
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 62.5 bits (145), Expect = 1e-10
Identities = 24/75 (32%), Positives = 42/75 (56%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F +
Sbjct: 183 IDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSA 242
Query: 436 VKTMGYKEPTPIQAQ 480
+K Y++PT IQ Q
Sbjct: 243 IKKQAYEKPTAIQCQ 257
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 54.4 bits (125), Expect = 4e-08
Identities = 26/63 (41%), Positives = 35/63 (55%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQ 480
QAQ
Sbjct: 185 QAQ 187
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 54.4 bits (125), Expect = 4e-08
Identities = 26/63 (41%), Positives = 35/63 (55%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQ 480
QAQ
Sbjct: 185 QAQ 187
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 54.4 bits (125), Expect = 4e-08
Identities = 26/63 (41%), Positives = 35/63 (55%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQ 480
QAQ
Sbjct: 185 QAQ 187
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 54.0 bits (124), Expect = 5e-08
Identities = 24/75 (32%), Positives = 40/75 (53%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +PF KNFY + + + V YR + E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 436 VKTMGYKEPTPIQAQ 480
+K + Y++P PIQAQ
Sbjct: 411 LKKLNYEKPMPIQAQ 425
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 53.6 bits (123), Expect = 7e-08
Identities = 23/75 (30%), Positives = 40/75 (53%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +PF KNFY + + + EV YR + E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 436 VKTMGYKEPTPIQAQ 480
+K + Y++P PIQ Q
Sbjct: 544 MKKLNYEKPMPIQTQ 558
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 50.8 bits (116), Expect = 5e-07
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = +1
Query: 274 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 441
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 442 TMGYKEPTPIQAQ 480
+ G+ PTPIQAQ
Sbjct: 452 SAGFPSPTPIQAQ 464
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 45.6 bits (103), Expect = 2e-05
Identities = 24/78 (30%), Positives = 41/78 (52%)
Frame = +1
Query: 250 GFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ 429
G +P + ++ P V K S +++ R + +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 430 QGVKTMGYKEPTPIQAQG 483
+ +K G PTPIQ QG
Sbjct: 110 RMLKDKGIMHPTPIQVQG 127
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 41.5 bits (93), Expect = 3e-04
Identities = 21/66 (31%), Positives = 35/66 (53%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 465
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 466 PIQAQG 483
PIQ QG
Sbjct: 171 PIQVQG 176
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 35.1 bits (77), Expect = 0.025
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +1
Query: 340 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQ 480
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQ 170
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 34.7 bits (76), Expect = 0.033
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +1
Query: 358 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQA 477
TV GV H F E N + + +T+GYK+PTPIQA
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQA 195
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 34.7 bits (76), Expect = 0.033
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 337 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQ 340
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 33.1 bits (72), Expect = 0.10
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 331 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 420
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 31.5 bits (68), Expect = 0.31
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 316 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 480
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQ 139
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 0.71
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -3
Query: 206 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 90
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 30.3 bits (65), Expect = 0.71
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
PI+ F++ D V +GV GYK+P+ IQ
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQ 49
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +1
Query: 262 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 438
+ PF + +P P ++ + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 439 KTMGYKEPTPIQ 474
+ Y +PTP+Q
Sbjct: 175 RRCKYVKPTPVQ 186
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQ 474
FE N V +K GYK PTPIQ
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQ 55
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
V SG +V P+ F + + D + ++ Y PTP+Q
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQ 178
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 474
V SG +V P+ F + + D + ++ Y PTP+Q
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQ 178
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1
Query: 268 VGVKQIPIWASHVVPSREFFF 206
VGVK+I W + ++PSR+F F
Sbjct: 81 VGVKEIEGWTARLLPSRQFGF 101
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 277 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 432
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 277 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 432
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +1
Query: 268 PF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 444
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 445 MGYKEPTPIQ 474
Y +PTP+Q
Sbjct: 164 CKYVKPTPVQ 173
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 268 VGVKQIPIWASHVVPSREF 212
VGVK+I W + ++PSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At3g14810.1 68416.m01871 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 853
Score = 27.5 bits (58), Expect = 5.0
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Frame = -1
Query: 247 IWASHVVPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKF-GTTVSTAIIPITRH- 74
+W V+ + F F K R ++S A R ++ VA + T+ ++ + H
Sbjct: 355 LWLGLVLLAWHFLFDKKVERETRSTALRYVTRVLVCLLVALIIWLVKTILVKVLASSFHM 414
Query: 73 -DYFSDLVEDVYLNYGFFLTQGPP 5
YF + E ++ Y GPP
Sbjct: 415 STYFDRIQESLFTQYVIETLSGPP 438
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 268 VGVKQIPIWASHVVPSREF 212
VGVK+I W + ++PSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 268 VGVKQIPIWASHVVPSREF 212
VGVK+I W + ++PSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1127
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +3
Query: 111 VPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGTTCD 239
+P+L ATN ++L + ++L + K N L+ + CD
Sbjct: 649 IPDLSMATNLETLKLSSCSSLVELPSSIQYLNKLNDLDMSYCD 691
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 19 SERIHSLNKHLQLNPK 66
S IHSLNK L LNP+
Sbjct: 789 SSHIHSLNKTLSLNPR 804
>At1g61240.2 68414.m06901 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 425
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 478 ELEWASVLCNPLSLHLVAHNQENW 407
+LEW+S ++H+VAHNQ W
Sbjct: 157 DLEWSSK-----AIHIVAHNQTKW 175
>At1g61240.1 68414.m06900 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 425
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 478 ELEWASVLCNPLSLHLVAHNQENW 407
+LEW+S ++H+VAHNQ W
Sbjct: 157 DLEWSSK-----AIHIVAHNQTKW 175
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 19 SERIHSLNKHLQLNPK 66
S ++HSLNK L LNP+
Sbjct: 786 SSQLHSLNKSLSLNPR 801
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,661,111
Number of Sequences: 28952
Number of extensions: 185261
Number of successful extensions: 642
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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