Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00245
(488 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 153 1e-37
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 152 1e-37
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 150 5e-37
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 138 3e-33
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 94 6e-20
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 69 2e-12
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 5e-12
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 6e-11
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 60 1e-09
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 8e-08
SB_29289| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51
SB_27085| Best HMM Match : Filamin (HMM E-Value=1.5) 31 0.67
SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_41892| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015) 30 1.2
SB_28120| Best HMM Match : ScdA_N (HMM E-Value=6.5) 29 1.6
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40) 29 1.6
SB_43290| Best HMM Match : AMP-binding (HMM E-Value=6.5e-16) 28 3.6
SB_38784| Best HMM Match : Apo-VLDL-II (HMM E-Value=8.3) 28 3.6
SB_55740| Best HMM Match : C1_1 (HMM E-Value=3.6) 28 3.6
SB_14895| Best HMM Match : CcmE (HMM E-Value=5.3) 28 3.6
SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07) 28 4.7
SB_45916| Best HMM Match : Cadherin (HMM E-Value=0) 28 4.7
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_31943| Best HMM Match : ResIII (HMM E-Value=1.6) 27 6.3
SB_29335| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 153 bits (370), Expect = 1e-37
Identities = 74/83 (89%), Positives = 80/83 (96%)
Frame = +2
Query: 5 NAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDL 184
+AV+TVPAYF+DSQRQATKDAGTI+GLNVLRIINEPTAAAIAYGLDKK ERNVLI+DL
Sbjct: 141 DAVVTVPAYFHDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGVERNVLIYDL 200
Query: 185 GGGTFDVSILTIEDGIFEVKSTA 253
GGGTFDVS+LTIEDGIFEVKSTA
Sbjct: 201 GGGTFDVSVLTIEDGIFEVKSTA 223
Score = 148 bits (359), Expect = 2e-36
Identities = 68/77 (88%), Positives = 75/77 (97%)
Frame = +1
Query: 256 DTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEI 435
DTHLGGEDFDN+MV+HFV++FK+KYKKD+ NKRA+RRLRTACERAKRTLSSSTQASIEI
Sbjct: 225 DTHLGGEDFDNKMVDHFVKQFKQKYKKDITPNKRAMRRLRTACERAKRTLSSSTQASIEI 284
Query: 436 DSLFEGIDFYTSITRAR 486
DSLFEGIDFYTSITRAR
Sbjct: 285 DSLFEGIDFYTSITRAR 301
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 152 bits (369), Expect = 1e-37
Identities = 74/82 (90%), Positives = 78/82 (95%)
Frame = +2
Query: 5 NAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDL 184
+AV+TVPAYFNDSQRQATKDAG ISGLNVLRIINEPTAAAIAYGLDKK ERNVLIFDL
Sbjct: 234 DAVVTVPAYFNDSQRQATKDAGVISGLNVLRIINEPTAAAIAYGLDKKVGQERNVLIFDL 293
Query: 185 GGGTFDVSILTIEDGIFEVKST 250
GGGTFDVS+L+IEDGIFEVKST
Sbjct: 294 GGGTFDVSVLSIEDGIFEVKST 315
Score = 142 bits (344), Expect = 1e-34
Identities = 66/77 (85%), Positives = 73/77 (94%)
Frame = +1
Query: 256 DTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEI 435
DTHLGGEDFDN MV+ FV++FK+KYKKD+ NKRALRRLRTACERAKRTLSSSTQASIEI
Sbjct: 318 DTHLGGEDFDNNMVDFFVKQFKQKYKKDITPNKRALRRLRTACERAKRTLSSSTQASIEI 377
Query: 436 DSLFEGIDFYTSITRAR 486
DSL++GIDFYTSITRAR
Sbjct: 378 DSLYDGIDFYTSITRAR 394
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/22 (90%), Positives = 22/22 (100%)
Frame = +2
Query: 5 NAVITVPAYFNDSQRQATKDAG 70
+AV+TVPAYFNDSQRQATKDAG
Sbjct: 166 DAVVTVPAYFNDSQRQATKDAG 187
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 150 bits (364), Expect = 5e-37
Identities = 73/84 (86%), Positives = 81/84 (96%), Gaps = 1/84 (1%)
Frame = +2
Query: 5 NAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDL 184
+AVITVPAYFNDSQRQATKDAGTI+GLNVLR+INEPTAAA+AYGLDK +GE+NVLIFDL
Sbjct: 141 SAVITVPAYFNDSQRQATKDAGTIAGLNVLRVINEPTAAALAYGLDKSLSGEKNVLIFDL 200
Query: 185 GGGTFDVSILTIEDG-IFEVKSTA 253
GGGTFDVSILTI+DG +FEVKSTA
Sbjct: 201 GGGTFDVSILTIDDGSLFEVKSTA 224
Score = 146 bits (353), Expect = 1e-35
Identities = 66/77 (85%), Positives = 73/77 (94%)
Frame = +1
Query: 256 DTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEI 435
DTHLGGEDFDNR+VNHFV EFKRKYKKD++ N RA+RRLRTACERAKRTLSSST+ASIE+
Sbjct: 226 DTHLGGEDFDNRLVNHFVAEFKRKYKKDMSKNSRAMRRLRTACERAKRTLSSSTEASIEV 285
Query: 436 DSLFEGIDFYTSITRAR 486
DSLFEGIDFYT I+RAR
Sbjct: 286 DSLFEGIDFYTKISRAR 302
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 138 bits (333), Expect = 3e-33
Identities = 63/82 (76%), Positives = 77/82 (93%)
Frame = +2
Query: 5 NAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDL 184
+AV+TVPAYFND+QRQATKDAG I+GL V+RIINEPTAAAIAYG+DKK GE+N+L+FDL
Sbjct: 839 HAVVTVPAYFNDAQRQATKDAGAIAGLTVMRIINEPTAAAIAYGMDKK-EGEKNILVFDL 897
Query: 185 GGGTFDVSILTIEDGIFEVKST 250
GGGTFDVS+LTI++G+FEV +T
Sbjct: 898 GGGTFDVSLLTIDNGVFEVVAT 919
Score = 88.2 bits (209), Expect = 3e-18
Identities = 39/77 (50%), Positives = 56/77 (72%)
Frame = +1
Query: 256 DTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEI 435
DTHLGGEDFD ++ HF++ +K+K K++ + RA+++LR E+AKR LS+ QA +EI
Sbjct: 922 DTHLGGEDFDQNVMEHFIKLYKKKKGKNIRKDNRAVQKLRREVEKAKRALSTQHQARVEI 981
Query: 436 DSLFEGIDFYTSITRAR 486
+S FEG DF +TRAR
Sbjct: 982 ESFFEGEDFSEMLTRAR 998
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 93.9 bits (223), Expect = 6e-20
Identities = 46/82 (56%), Positives = 61/82 (74%)
Frame = +2
Query: 8 AVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLG 187
AV++VPA F+ QR AT A +++G+ VLR+INEPTAAA+AYGL KK G NV++ DLG
Sbjct: 172 AVMSVPAEFDIKQRNATVKAASLAGITVLRVINEPTAAALAYGLHKK-EGVANVMVVDLG 230
Query: 188 GGTFDVSILTIEDGIFEVKSTA 253
GGT DVS+L I+ G+F + A
Sbjct: 231 GGTLDVSLLNIQGGMFVTMAMA 252
Score = 38.3 bits (85), Expect = 0.003
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Frame = +1
Query: 256 DTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIE- 432
+ LGG+DF+ R + + +Q +++ + L T ++RLR E AK L+ + + +I+
Sbjct: 254 NNRLGGQDFNARFMQYLLQLIHKRFNRQL-TCSEDIQRLRQEVEAAKINLTRTNEVTIKL 312
Query: 433 -IDSLFEG---IDFYTSITR 480
+ SL EG + F +I+R
Sbjct: 313 MLPSLSEGKKIVKFKETISR 332
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 69.3 bits (162), Expect = 2e-12
Identities = 46/81 (56%), Positives = 51/81 (62%), Gaps = 26/81 (32%)
Frame = +2
Query: 2 QNAVITVPAYFNDSQRQATKDAGTISGLN------------------------VLRIINE 109
+ AVITVPA+FND+QRQATKDAGTI+GL+ VLRIINE
Sbjct: 39 KRAVITVPAHFNDAQRQATKDAGTIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINE 98
Query: 110 PTAAAIAYGLDKK--GTGERN 166
PTAAAIAYGLDK G ERN
Sbjct: 99 PTAAAIAYGLDKARGGKAERN 119
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 67.7 bits (158), Expect = 5e-12
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Frame = +2
Query: 5 NAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKG---TGERNVLI 175
+ VI+VP+Y+ D QR+ DA +GLN LR++N+ TA ++AYG+ K+ RNV+
Sbjct: 198 DCVISVPSYYTDRQRRCMLDASATAGLNCLRLMNDTTAVSLAYGIYKQDLPTDKPRNVVF 257
Query: 176 FDLGGGTFDVSILTIEDGIFEVKSTAATP 262
D+G + V I G +V STA P
Sbjct: 258 VDIGHSSLQVCITAFLKGQLKVLSTAVEP 286
Score = 60.5 bits (140), Expect = 7e-10
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +1
Query: 256 DTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSST-QASIE 432
+ +LGG DFD +V HF QEFK KYK D+ ++ +A +L CE+ K+ +S++T + I
Sbjct: 285 EPNLGGRDFDYVLVEHFAQEFKTKYKIDVHSSIKAKIKLGAECEKLKKLMSANTSEIPIN 344
Query: 433 IDSLFEGIDFYTSITRAR 486
I+ E D + + RA+
Sbjct: 345 IECFMEDKDVHGRMKRAQ 362
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 64.1 bits (149), Expect = 6e-11
Identities = 30/60 (50%), Positives = 41/60 (68%)
Frame = +1
Query: 256 DTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEI 435
DT+LGGEDFDN ++ + EFK++ DL+ + AL+RLR A E+AK LSSS Q I +
Sbjct: 32 DTYLGGEDFDNTLLKFLIAEFKKESGVDLSKDSMALQRLREAAEKAKIELSSSVQTDINL 91
Score = 47.2 bits (107), Expect = 7e-06
Identities = 18/28 (64%), Positives = 25/28 (89%)
Frame = +2
Query: 167 VLIFDLGGGTFDVSILTIEDGIFEVKST 250
+ ++DLGGGTFD+SIL I+ G+FEVK+T
Sbjct: 2 IAVYDLGGGTFDISILEIQKGVFEVKAT 29
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 60.1 bits (139), Expect = 1e-09
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Frame = +1
Query: 256 DTHLGGEDFDNRMVNHFVQEFKR-----KYKKDLATNKRALRRLRTACERAKRTLSSSTQ 420
D LGG +FD +++ +FKR K+K D TNKR+ +L+T+ E+ K LS+
Sbjct: 186 DGALGGRNFDEVLLDLLANDFKRQVLLWKWKIDPLTNKRSKTKLQTSAEQCKNILSTLES 245
Query: 421 ASIEIDSLFEGIDFYTSITR 480
A+ +DSL EGIDF ++R
Sbjct: 246 ANCSVDSLCEGIDFQGQVSR 265
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 53.6 bits (123), Expect = 8e-08
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 4/75 (5%)
Frame = +2
Query: 2 QNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKK----GTGERNV 169
++ V+TVP +FN ++R+A A + GLNVL+I+N TA A+ YGL ++ T E++
Sbjct: 106 KDVVLTVPPFFNQAERRALLRAAELVGLNVLQIMNSNTAVALNYGLFQQKSFNDTLEKHF 165
Query: 170 LIFDLGGGTFDVSIL 214
+ +D+G + +I+
Sbjct: 166 MFYDMGASSTVATIV 180
Score = 52.8 bits (121), Expect = 1e-07
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +1
Query: 256 DTHLGGEDFDNRMVNHFVQEFKR--KYKKDLATNKRALRRLRTACERAKRTLSSSTQASI 429
D LGG D R+ +H VQ FK+ K+K ++ + RA+ + R K+ LS++ +
Sbjct: 207 DRTLGGHAIDMRLRDHLVQLFKKNYKFKGEVTQSSRAMAKFYKEALRVKQVLSANNEIFA 266
Query: 430 EIDSLFEGIDFYTSITR 480
+I+ +F+G DF +TR
Sbjct: 267 QIEGVFDGKDFRVKVTR 283
>SB_29289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 956
Score = 31.1 bits (67), Expect = 0.51
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 303 LCPGVQEEIQKGPRYQQESS*AFAYCM*EGK 395
LCP ++ + GP +++E AFA C+ GK
Sbjct: 169 LCPSPEQNGEPGPMFEREGGDAFANCVARGK 199
>SB_27085| Best HMM Match : Filamin (HMM E-Value=1.5)
Length = 634
Score = 30.7 bits (66), Expect = 0.67
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +2
Query: 167 VLIFDLGGGTFDVSILTIEDGIFEVK 244
V I+DLG GT++++IL E G++ ++
Sbjct: 319 VPIYDLGNGTYEMAILFHEPGVYSIR 344
>SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1172
Score = 30.7 bits (66), Expect = 0.67
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 209 ILTIEDGIFEVKSTAATPTWEVRTLTIAWSTTLSR-SSRGNTKRTSLPTRELLGVCVLHV 385
ILT+E+G+F+ ++ E L+ +WS R + G K S+P G C LH
Sbjct: 799 ILTLENGLFKQHDSSIRELVEFLELSRSWSLLHPRWAPCGLAKVLSVP-HCCWGSCALHH 857
Query: 386 RGQR 397
GQR
Sbjct: 858 LGQR 861
>SB_41892| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 294 GQPLCPGVQEEIQKGPRYQQESS*AFAYCM 383
G LCP ++ + GP +++E S AFA C+
Sbjct: 218 GYKLCPLPEQNGEPGPMFEREGSDAFANCV 247
>SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015)
Length = 600
Score = 29.9 bits (64), Expect = 1.2
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 173 IFDLGGGTFDVSILTIEDGIFEV 241
+FDLG G+++V L +E G++ V
Sbjct: 311 VFDLGNGSYEVLFLVMEPGVYRV 333
>SB_28120| Best HMM Match : ScdA_N (HMM E-Value=6.5)
Length = 452
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 303 LCPGVQEEIQKGPRYQQESS*AFAYCM*EGK 395
LCP ++ GP +++E S AFA C+ GK
Sbjct: 206 LCPLPEQNGGPGPMFEREGSDAFANCVTRGK 236
>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
Length = 2057
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -2
Query: 274 HLPSGCRGGGFHLEDTILDGKD*HVEGTAAEVKDKYISFSSTLFVKTVSNRSS 116
+LP+ CR L IL GKD VEG D Y+ S + K V R +
Sbjct: 407 YLPTACR-----LTVAILKGKDLRVEGEETTEIDTYVKVSMIMGGKAVKKRKT 454
>SB_43290| Best HMM Match : AMP-binding (HMM E-Value=6.5e-16)
Length = 980
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -3
Query: 294 HAIVKVLTSQVGVAAVDFTSKIPSSMVRIDTSKVPPPRSKISTFRSPVP 148
H+I K+L S+ +A VD +K +V D PP R + +R+P P
Sbjct: 438 HSIAKILKSKEAIAVVD--NKSWPMIVETDD---PPKRKLSNPYRAPTP 481
>SB_38784| Best HMM Match : Apo-VLDL-II (HMM E-Value=8.3)
Length = 439
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 303 LCPGVQEEIQKGPRYQQESS*AFAYCM 383
LCP ++ + GP +++E S AFA C+
Sbjct: 107 LCPLPEQNGEPGPMFEREGSDAFANCV 133
>SB_55740| Best HMM Match : C1_1 (HMM E-Value=3.6)
Length = 533
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 303 LCPGVQEEIQKGPRYQQESS*AFAYCM 383
LCP ++ + GP +++E S AFA C+
Sbjct: 74 LCPLPEQNGEPGPMFEREGSDAFANCV 100
>SB_14895| Best HMM Match : CcmE (HMM E-Value=5.3)
Length = 485
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 258 VAAVDFTSKIPSSMVRIDTSKVPPPRSKISTFRSPVPF 145
V +V S+IP S + VPPPRS ++ +P PF
Sbjct: 41 VNSVQIDSQIPGSTFQTVLHPVPPPRS-VAMDNAPKPF 77
>SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)
Length = 408
Score = 27.9 bits (59), Expect = 4.7
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +2
Query: 122 AIAYGLDKKGTGERNVLIFDLGGGTFDVSI--LTIEDGIFEVKSTAATPTWEVRTLTIAW 295
AIA L ++ T +L+ + T VSI LTI+ G + T TPT+ + T +
Sbjct: 277 AIAINLSQENTVIIYMLLHTVNCETSFVSITPLTIKGGDLRISRTWNTPTYTLVTAPVMK 336
Query: 296 STTLSRSSR 322
S L + +R
Sbjct: 337 SVILRQPTR 345
>SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1774
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 175 DKYISFSSTLFVKTVSNRSSSRFIDDSEN 89
+K ISF +LF+ VSN S+ R+I +E+
Sbjct: 752 NKVISFGPSLFMDKVSNASAGRYICIAES 780
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 27.5 bits (58), Expect = 6.3
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -3
Query: 240 TSKIPSSMVRIDT-SKVPPPRSKISTFRSPVPFLSRP*AIAAAVGSLMIRRTF 85
TS I S I T SK PP + +ST SP A+ A+ SL++ F
Sbjct: 1264 TSSIMQSSSNIPTTSKTPPSSTCLSTAVSPAAGADSNNAVNVAISSLVLPSLF 1316
>SB_31943| Best HMM Match : ResIII (HMM E-Value=1.6)
Length = 1053
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 303 LCPGVQEEIQKGPRYQQESS*AFAYCM*EGKEDL 404
LCP ++ + GP +++E AFA C+ D+
Sbjct: 202 LCPLPEQNGEHGPMFEREGIYAFANCVARSSSDM 235
>SB_29335| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 840
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 303 LCPGVQEEIQKGPRYQQESS*AFAYCM*EGKEDL 404
LCP ++ + GP +++E AFA C+ D+
Sbjct: 140 LCPLPEQNGEHGPMFEREGIYAFANCVARSSSDM 173
>SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 956
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 258 VAAVDFTSKIPSSMVRIDTSKVPPPRSKISTFRSPVPFLS 139
V VD +S+ + + + +P P+S + RSP+PFLS
Sbjct: 62 VTRVDGSSEDIDKPLDVPFTGLPSPQSYKPSLRSPMPFLS 101
>SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 864
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +1
Query: 238 GEIHRRDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACE 387
G + DT+ GG D D + +Q + TN+ A R R CE
Sbjct: 275 GSVSSTDTNHGGSDEDLIDYSLTLQAMRHPVMNGRPTNRNAQSRYREECE 324
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,833,120
Number of Sequences: 59808
Number of extensions: 317240
Number of successful extensions: 1129
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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