Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00245
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   3.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   9.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.3  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 44  QRQATKDAGTISGLNVLRIINEPTAAAIAYG 136
           Q +A K A  +   N   II+EPT     YG
Sbjct: 353 QAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = +2

Query: 83  LNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDV 205
           LN+  I   P+     Y +      + N+L  DL  G  ++
Sbjct: 787 LNISDIALYPSQTTHGYDIYASSIDKENILFLDLSTGKVEM 827


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 12/40 (30%), Positives = 14/40 (35%)
 Frame = +2

Query: 296 STTLSRSSRGNTKRTSLPTRELLGVCVLHVRGQRGPCHRP 415
           S+   R+     K       EL    V  V  Q GP H P
Sbjct: 23  SSPKKRNKNPQPKNAVCALNELKSGAVYKVVDQTGPTHAP 62


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +1

Query: 217 HRGWYLRGEIHRRDTHLGGEDFDNRMVNH 303
           H  W     + R    + G+D+   MVNH
Sbjct: 462 HEPWNAPLNVQRAAKCIIGKDYSLPMVNH 490


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,695
Number of Sequences: 438
Number of extensions: 2915
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)