Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00244
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    25   0.85 
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    24   1.5  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   6.0  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 180 IVLVE*MYTKYVYCACHKC 236
           ++ V  +YT  V C CH C
Sbjct: 911 LIFVSTLYTANVVCICHVC 929


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 68  CNF*YFFVLNYS*IFIFNCSYIKYVCSLSKLLIF 169
           C F Y F + Y    +   S I +  +L+K +IF
Sbjct: 148 CYFIYLFTVYYIYYSVHEASIINFGYTLAKFMIF 181


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 689 LIFSRLFNFLDNSESLPFHKCRPRF 615
           LIF    +FLDN +++ + K    F
Sbjct: 225 LIFFATLDFLDNVDTIMYEKTNVTF 249


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,887
Number of Sequences: 336
Number of extensions: 3226
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)