Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00243
         (703 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.8  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   4.2  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   7.4  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   7.4  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   7.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.7  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 477  DVTRSPPV*SDHTSDVDKQPCSIYYCHQKHDFG 379
            D  R  P  S    DV +     Y CH ++D+G
Sbjct: 1351 DKIRQQPDGSLFIRDVSRNNAGEYSCHVENDYG 1383


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 640 HQLSGVGIVHHDEERCYNN 584
           H+++   I H+D+ER ++N
Sbjct: 251 HEIAVHSITHNDDERFWSN 269


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 578 SGVTLKLESDGYCQVH*PSKDQDG 507
           SG T+ +  DGY  +   + + DG
Sbjct: 456 SGKTITVGGDGYADISLGANEDDG 479


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 578 SGVTLKLESDGYCQVH*PSKDQDG 507
           SG T+ +  DGY  +   + + DG
Sbjct: 457 SGKTITVGGDGYADISLGANEDDG 480


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 578 SGVTLKLESDGYCQVH*PSKDQDG 507
           SG T+ +  DGY  +   + + DG
Sbjct: 457 SGKTITVGGDGYADISLGANEDDG 480


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 162 LPVTSIHCSLALG 124
           LPVTSIH   A+G
Sbjct: 131 LPVTSIHLRGAIG 143


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,189
Number of Sequences: 336
Number of extensions: 3656
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)