Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00243
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    27   2.6  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    26   4.5  
SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||...    25   7.9  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = +2

Query: 497 HPAARPGLCWVSVPDNNRQTPVLMLHRLDIVVASFFIMVYNTYARQLVNXPQQIQ 661
           HPA   G+    +P + +      + ++DIVV + +     T A+  V  P+ ++
Sbjct: 65  HPAVHGGILARDIPSDEKDLVEQSIEKIDIVVCNLY-PFRETIAKPNVTIPEAVE 118


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = +1

Query: 346 LQSSETPLISGTEVVLLMTVINAAWLLVNIACVIGLHRRRPGNIKFYVLFASCRPSWSLL 525
           LQS  +  I+ T   +++T+IN+   LVN      +H   P +I  ++   SC+ + SLL
Sbjct: 3   LQSLSSVAIAETRRQIILTIINSLVYLVNFISCPSIH-SIPFHISTHL--TSCQANISLL 59


>SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 173 KQRLSSTSSLGKKYCHCFQLRICCFILV 256
           K RL+  S   K+Y  CF + + C +L+
Sbjct: 215 KNRLNKVSRKAKQYPRCFIILLLCALLL 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,948,966
Number of Sequences: 5004
Number of extensions: 59189
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)