Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00243
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0563 + 4178176-4178295,4178391-4178834                           29   3.6  
02_02_0580 + 11757667-11758258,11758419-11758572,11758682-117587...    29   4.7  
08_02_0444 - 17209447-17209491,17210559-17210849,17211655-172116...    28   6.2  

>07_01_0563 + 4178176-4178295,4178391-4178834
          Length = 187

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 416 AAFITVIRSTTSVPLMRGVSEDCRAGKVL 330
           AA  TV+ + + VPL+RG S + R+G V+
Sbjct: 126 AATATVLSAASLVPLLRGESAEARSGGVM 154


>02_02_0580 +
           11757667-11758258,11758419-11758572,11758682-11758756,
           11758836-11758980,11759222-11759287,11759347-11759500,
           11761506-11761624
          Length = 434

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 211 FFAQTRSRR*PLFPVSSTCHVNPLFPGVRFFRKRVVGNR 95
           FF+ + SR     P+S+ CH+  +  G+ FF+  +  +R
Sbjct: 237 FFSCSFSREITFSPISALCHLGVMVLGLAFFKDSIPQSR 275


>08_02_0444 -
           17209447-17209491,17210559-17210849,17211655-17211672,
           17211798-17211969,17212523-17212630,17212940-17213382
          Length = 358

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = +2

Query: 11  IRHEHSRRQTS*LSVRIQNIPNFVKMNKPIPYNT-FPKEPNAREQWIDVTGRGNWKQRLS 187
           + HE++R+    +++         K+     +N  F  E  ++    D+ G+     +  
Sbjct: 207 VNHENARQDAINVALERNPAAFMPKVLNSTAHNCEFVHEQKSKAAEGDIVGKHTKGCKCK 266

Query: 188 STSSLGKKYCHCFQLRICC 244
            T  L KKYC CF+  + C
Sbjct: 267 RTECL-KKYCECFKASVFC 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,543,629
Number of Sequences: 37544
Number of extensions: 401790
Number of successful extensions: 912
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)