Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00243
(703 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24326| Best HMM Match : DENN (HMM E-Value=0) 30 2.1
SB_17101| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_29518| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_11017| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_948| Best HMM Match : Sec62 (HMM E-Value=9.5) 29 3.6
SB_36632| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_13816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_16827| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_4088| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_39705| Best HMM Match : Keratin_B2 (HMM E-Value=3.5) 28 6.4
>SB_24326| Best HMM Match : DENN (HMM E-Value=0)
Length = 1281
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 518 DQDGRQDAKRT*NLMLPGRLLCSPITQAMLTSNHAAFIT 402
DQDG +D KR + R +C +T + S+H+ F T
Sbjct: 109 DQDGIKDGKRKRSRSKNKREICMTLTSICIVSHHSFFAT 147
>SB_17101| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = +2
Query: 140 QWIDVTGRGNWKQRLSSTSSLGKKYCHCFQLRICCFILVT*PCSPMSAIPGCC 298
+W G+WK RL ++ G C ++ P SP+ +PG C
Sbjct: 40 RWSKTNHSGSWKFRLPVLANPGSLLYPVAAFTCMCSLVPASPRSPLFVLPGLC 92
>SB_29518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 316 IGADTSTLPAL--QSSETPLISGTEVVLLMTVINAAWLLVNIACVIGLHRRR 465
I AD ++L L Q E S TE+V++ V+ +LV +AC I L RR+
Sbjct: 321 INADPNSLKILRPQEKEQEESSQTEIVVIAVVVVIVAVLVAVACCI-LFRRK 371
>SB_11017| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 575 RLDIVVASFFIMVYNTYARQLVNXPQQIQARPENQIRDVSFI 700
+LD + F M+Y Y R+ + RP ++IR++ FI
Sbjct: 93 QLDKIRKHCFKMLYLKYCRKASDIDSDFDTRPRSEIRNIRFI 134
>SB_948| Best HMM Match : Sec62 (HMM E-Value=9.5)
Length = 306
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 316 IGADTSTLPAL--QSSETPLISGTEVVLLMTVINAAWLLVNIACVIGLHRRR 465
I AD ++L L Q E S TE+V++ V+ +LV +AC I L RR+
Sbjct: 138 INADPNSLKILRPQEKEQEESSQTEIVVIAVVVVIVAVLVAVACCI-LFRRK 188
>SB_36632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = -3
Query: 470 PGRLLCSPITQAMLTSNHAAFITVIRSTTSVPLMRGVSEDCRAGKVLVSAPM*VVRVNNS 291
P LC+P+ Q++ TS H A ++ P+ + S+ +G + + P+ +V + S
Sbjct: 117 PNLTLCAPVKQSISTSVHTA--PYVKYENGYPVYKAQSKP-TSGTLWKNGPLGIVFLERS 173
Query: 290 PVLQTL 273
LQ L
Sbjct: 174 QPLQDL 179
>SB_13816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 316 IGADTSTLPAL--QSSETPLISGTEVVLLMTVINAAWLLVNIACVIGLHRRR 465
I AD ++L L Q E S TE+V++ V+ +LV +AC I L RR+
Sbjct: 88 INADPNSLKILRPQEKEQEESSQTEIVVIAVVVVIVAVLVAVACCI-LFRRK 138
>SB_16827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 394 LMTVINAAWLLVNIACVIGLHRRRPGNIK 480
+ + N +W+LV +AC++ RR+P +K
Sbjct: 24 ISAISNLSWILVGLACLLQEVRRKPQPLK 52
>SB_4088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 895
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 316 IGADTSTLPAL--QSSETPLISGTEVVLLMTVINAAWLLVNIACVIGLHRRR 465
I AD ++L L Q E S TE+V++ V+ +LV +AC I L RR+
Sbjct: 728 IDADPNSLTILRPQEKEQEESSQTEIVVIAVVVVIVAVLVAVACCI-LFRRK 778
>SB_39705| Best HMM Match : Keratin_B2 (HMM E-Value=3.5)
Length = 109
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 369 HQWDRSRASDDSNKCCMVACQHR 437
H W A+D +KCC V C +
Sbjct: 35 HSWTDCNATDRQSKCCHVLCDRK 57
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,912,920
Number of Sequences: 59808
Number of extensions: 480454
Number of successful extensions: 947
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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