Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00243
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine re...    31   0.80 
AF098500-1|AAC67400.2|  311|Caenorhabditis elegans Hypothetical ...    28   7.4  

>AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 66 protein.
          Length = 286

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +2

Query: 518 LCWVSVPDNNRQTPVLMLHRLDIVVASFFIMVYNTYARQL 637
           L W ++P    +  +++L  LD VVASFF + Y+ + R++
Sbjct: 84  LVWPTIPLGAIRATLVLLITLDRVVASFFPIFYHNHRRRI 123


>AF098500-1|AAC67400.2|  311|Caenorhabditis elegans Hypothetical
           protein F43B10.1 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 101 PYNTFPKEPNAREQWIDVT-GRGNWKQRLSSTSSLGKKYCH 220
           P   +    NA   WI +T  R  +KQRL  T    +++CH
Sbjct: 74  PLTAYELNTNAIFFWIHITMARRGFKQRLKVTRESIERFCH 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,677,886
Number of Sequences: 27780
Number of extensions: 347706
Number of successful extensions: 827
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)