Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00243
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21300.1 68417.m03077 pentatricopeptide (PPR) repeat-containi...    28   6.9  
At5g18700.1 68418.m02219 protein kinase-related contains protein...    27   9.1  
At1g78960.1 68414.m09206 lupeol synthase, putative / 2,3-oxidosq...    27   9.1  

>At4g21300.1 68417.m03077 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 857

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 169 VSSTCHVNPLFPGVRFFR 116
           +SS CHV  +  GVRFFR
Sbjct: 651 ISSCCHVGDVDEGVRFFR 668


>At5g18700.1 68418.m02219 protein kinase-related contains protein
           kinase domain, INTERPRO:IPR000719
          Length = 1366

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 119 KEPNAREQWIDVTGRGNWKQRLS 187
           K+P  R QW D+ G   WK +++
Sbjct: 236 KDPAQRIQWADLCGHAFWKSKIN 258


>At1g78960.1 68414.m09206 lupeol synthase, putative /
           2,3-oxidosqualene-triterpenoid cyclase, putative similar
           to lupeol synthase GI:1762150 from [Arabidopsis
           thaliana], 2,3-oxidosqualene-triterpenoid cyclase
           [Arabidopsis thaliana] GI:2738027
          Length = 763

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 327 YQYLTRPA-VLGDAPHQWDRSRASDDSNKCCMV 422
           Y+++++ A  L D  H W  S  + ++ KCCM+
Sbjct: 465 YRHISKGAWTLSDRDHGWQVSDCTAEALKCCML 497


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,664,175
Number of Sequences: 28952
Number of extensions: 320912
Number of successful extensions: 714
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)