Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00242
         (761 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   6.1  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   6.1  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   6.1  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   6.1  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           22   6.1  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 355 WLKSSGLKSLTKHKLPRQT 411
           W+K+ G  S T +K  RQT
Sbjct: 171 WMKAHGDSSATGNKRTRQT 189


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 157 VSPDGSLCASGGKDMK 204
           VSP+GSL  S  ++M+
Sbjct: 18  VSPEGSLLPSNSREMR 33


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 355 WLKSSGLKSLTKHKLPRQT 411
           W+K+ G  S T +K  RQT
Sbjct: 171 WMKAHGDSSATGNKRTRQT 189


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 462 AGYSDNTKEFGRFP 503
           AG+S+   E GRFP
Sbjct: 112 AGFSECASEVGRFP 125


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 355 WLKSSGLKSLTKHKLPRQT 411
           W+K+ G  S T +K  RQT
Sbjct: 171 WMKAHGDSSATGNKRTRQT 189


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,508
Number of Sequences: 336
Number of extensions: 4356
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)