Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00242
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   4.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   7.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.4  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 46  PIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTV 159
           P  +S  W +    W L  CKL+      S Y++ +T+
Sbjct: 88  PFELSVFWQQYPWQWGLGICKLRAYVSETSSYVSVLTI 125


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 754 VFYLHNNTLK*ALFNFLS*TYKEINKMLV 668
           VFY  + T+   L+N +S  ++E  K+++
Sbjct: 335 VFYYLSTTVNPLLYNIMSNKFREAFKLML 363


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = -2

Query: 316 PKAAHSQYLLGEKHKAVMISFGLRCGGVCHRSDPTTSPSCPYH 188
           PK  HS+    E      ++ G R GG C    P   P  P H
Sbjct: 406 PKRFHSRAASKEDLSPSSLADGARFGGSCLIHGPPL-PPLPLH 447


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = -2

Query: 316 PKAAHSQYLLGEKHKAVMISFGLRCGGVCHRSDPTTSPSCPYH 188
           PK  HS+    E      ++ G R GG C    P   P  P H
Sbjct: 406 PKRFHSRAASKEDLSPSSLADGARFGGSCLIHGPPL-PPLPLH 447


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 677 NASFENLHNFIYFHP 633
           N S+   HNF YF P
Sbjct: 207 NDSWRITHNFFYFDP 221


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 25  FSPNHANPIIVSCGWDRTVK 84
           F     NPI V   WD+ V+
Sbjct: 323 FDRMQGNPICVQIPWDKNVE 342


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 228 WQTPPHLRPNDIITALCFSPNRYWLCA 308
           W T   L P + + ALC++ +   +C+
Sbjct: 143 WNTRYCLTPTERLEALCWTQDEDVICS 169


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 228 WQTPPHLRPNDIITALCFSPNRYWLCA 308
           W T   L P + + ALC++ +   +C+
Sbjct: 196 WNTRYCLTPTERLEALCWTQDEDIICS 222


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,728
Number of Sequences: 438
Number of extensions: 4895
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)