Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00242
(761 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 131 4e-31
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 130 1e-30
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 130 1e-30
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 53 2e-07
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 52 4e-07
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 52 6e-07
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 50 1e-06
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 50 2e-06
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 48 5e-06
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 48 5e-06
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 48 5e-06
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 48 5e-06
At1g24530.1 68414.m03088 transducin family protein / WD-40 repea... 48 5e-06
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 48 7e-06
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 48 7e-06
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 48 9e-06
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 47 1e-05
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea... 47 1e-05
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 47 2e-05
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 47 2e-05
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 47 2e-05
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 47 2e-05
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 46 2e-05
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 46 3e-05
At1g24130.1 68414.m03044 transducin family protein / WD-40 repea... 46 3e-05
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 46 4e-05
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 45 6e-05
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 44 8e-05
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 44 8e-05
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 44 8e-05
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 44 8e-05
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 44 1e-04
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 44 1e-04
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 44 1e-04
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 44 1e-04
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 43 3e-04
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 42 3e-04
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea... 42 3e-04
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 42 4e-04
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 42 6e-04
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 42 6e-04
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 42 6e-04
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 42 6e-04
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 42 6e-04
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 42 6e-04
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 41 8e-04
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea... 41 8e-04
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 41 0.001
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 41 0.001
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 41 0.001
At3g51930.1 68416.m05696 transducin family protein / WD-40 repea... 40 0.001
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 40 0.001
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea... 40 0.002
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 40 0.002
At3g10530.1 68416.m01264 transducin family protein / WD-40 repea... 40 0.002
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea... 39 0.003
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 39 0.003
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 38 0.006
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 38 0.007
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 38 0.007
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 37 0.013
At3g50390.1 68416.m05512 transducin family protein / WD-40 repea... 37 0.013
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 37 0.013
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 37 0.013
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 37 0.013
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 37 0.013
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 37 0.017
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 37 0.017
At5g23730.1 68418.m02782 transducin family protein / WD-40 repea... 36 0.022
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 36 0.022
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 36 0.022
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 36 0.029
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 36 0.029
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 36 0.029
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 36 0.029
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 36 0.029
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 36 0.029
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea... 36 0.029
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 36 0.029
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 36 0.029
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 36 0.029
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 36 0.029
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea... 36 0.039
At4g38480.1 68417.m05438 transducin family protein / WD-40 repea... 35 0.051
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 35 0.051
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 35 0.051
At1g15850.1 68414.m01902 transducin family protein / WD-40 repea... 35 0.051
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 35 0.051
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 35 0.068
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 34 0.12
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 34 0.12
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 34 0.12
At4g35140.1 68417.m04996 transducin family protein / WD-40 repea... 33 0.16
At3g42660.1 68416.m04436 transducin family protein / WD-40 repea... 33 0.16
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 33 0.16
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 33 0.21
At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pf... 33 0.21
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 33 0.27
At2g18900.1 68415.m02205 transducin family protein / WD-40 repea... 33 0.27
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 32 0.36
At5g66240.2 68418.m08345 transducin family protein / WD-40 repea... 32 0.48
At5g66240.1 68418.m08344 transducin family protein / WD-40 repea... 32 0.48
At5g58760.1 68418.m07360 transducin family protein / WD-40 repea... 32 0.48
At4g21520.1 68417.m03110 transducin family protein / WD-40 repea... 32 0.48
At4g07410.1 68417.m01136 transducin family protein / WD-40 repea... 32 0.48
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 32 0.48
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 32 0.48
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 31 0.63
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea... 31 0.63
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 31 0.63
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea... 31 0.63
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 31 0.63
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 31 0.63
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 31 0.63
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 31 0.63
At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 ... 31 0.63
At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 ... 31 0.84
At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 ... 31 0.84
At5g50650.1 68418.m06276 WD-40 repeat family protein / St12p pro... 31 0.84
At5g50550.1 68418.m06260 WD-40 repeat family protein / St12p pro... 31 0.84
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 31 0.84
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 31 0.84
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 31 0.84
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 31 0.84
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 31 0.84
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 31 0.84
At1g52730.2 68414.m05959 transducin family protein / WD-40 repea... 31 0.84
At1g52730.1 68414.m05958 transducin family protein / WD-40 repea... 31 0.84
At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5 ... 31 1.1
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 31 1.1
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea... 31 1.1
At3g53390.1 68416.m05892 transducin family protein / WD-40 repea... 30 1.5
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 30 1.9
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 30 1.9
At5g45760.2 68418.m05626 transducin family protein / WD-40 repea... 30 1.9
At5g45760.1 68418.m05625 transducin family protein / WD-40 repea... 30 1.9
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 30 1.9
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 30 1.9
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 29 2.6
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 29 2.6
At4g03020.1 68417.m00410 transducin family protein / WD-40 repea... 29 2.6
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea... 29 2.6
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 29 2.6
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 29 3.4
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 29 3.4
At2g47790.1 68415.m05965 transducin family protein / WD-40 repea... 29 3.4
At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2 ... 29 3.4
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 29 3.4
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 29 3.4
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 29 4.5
At5g59200.1 68418.m07419 pentatricopeptide (PPR) repeat-containi... 29 4.5
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 29 4.5
At3g26480.1 68416.m03301 transducin family protein / WD-40 repea... 29 4.5
At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10... 29 4.5
At1g78070.2 68414.m09098 WD-40 repeat family protein contains Pf... 29 4.5
At5g59120.1 68418.m07409 subtilase family protein contains simil... 28 5.9
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 28 5.9
At5g14050.1 68418.m01644 transducin family protein / WD-40 repea... 28 5.9
At5g13850.1 68418.m01619 nascent polypeptide-associated complex ... 28 5.9
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 28 5.9
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 28 5.9
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 28 5.9
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 28 5.9
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 28 5.9
At3g12390.1 68416.m01544 nascent polypeptide associated complex ... 28 5.9
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 28 5.9
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 28 5.9
At1g69350.1 68414.m07958 pentatricopeptide (PPR) repeat-containi... 28 5.9
At1g48000.1 68414.m05346 myb family transcription factor similar... 28 5.9
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 28 7.8
At5g01290.1 68418.m00039 mRNA capping enzyme family protein simi... 28 7.8
At1g78770.1 68414.m09180 cell division cycle family protein simi... 28 7.8
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 28 7.8
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 131 bits (317), Expect = 4e-31
Identities = 57/83 (68%), Positives = 68/83 (81%)
Frame = +1
Query: 4 DWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCA 183
+WVSCVRFSPN P IVS WD+TVKVW+L NCKL+ + +GHSGYLNTV VSPDGSLCA
Sbjct: 150 EWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQNCKLRNSLVGHSGYLNTVAVSPDGSLCA 209
Query: 184 SGGKDMKAMLWDLNDGKHLHTLD 252
SGGKD +LWDL +GK L++L+
Sbjct: 210 SGGKDGVILLWDLAEGKKLYSLE 232
Score = 85.0 bits (201), Expect = 5e-17
Identities = 42/85 (49%), Positives = 57/85 (67%), Gaps = 8/85 (9%)
Frame = +3
Query: 246 LRPNDIITALCFSPNRYWLCAAFGPSIKIWDLESKEMVEELRPEIINQTQTSK----TDP 413
L II +LCFSPNRYWLCAA SI+IWDLESK +VE+L+ ++ ++ + ++ T
Sbjct: 231 LEAGSIIHSLCFSPNRYWLCAATENSIRIWDLESKSVVEDLKVDLKSEAEKNEGGVGTGN 290
Query: 414 PQ----CLSLAWSTDGQTLFAGYSD 476
+ C SL WS DG TLF+GY+D
Sbjct: 291 QKKVIYCTSLNWSADGSTLFSGYTD 315
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = +1
Query: 28 SPNHANPIIVSCGWDRTVKVWHLTNCKLKINHL-----GHSGYLNTVTVSPDGSLCASGG 192
+P + IIV+ D+++ +W LT GHS ++ V +S DG SG
Sbjct: 23 TPIDNSDIIVTASRDKSIILWKLTKDDKSYGVAQRRLTGHSHFVEDVVLSSDGQFALSGS 82
Query: 193 KDMKAMLWDLNDGK 234
D + LWDL G+
Sbjct: 83 WDGELRLWDLATGE 96
Score = 35.9 bits (79), Expect = 0.029
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWH-LTNCKLKINH-LGHSGYLNTVTVSPDGSL-- 177
V V FS + N IVS DRT+K+W+ L CK I+ GH +++ V SP+ +
Sbjct: 108 VLSVAFSTD--NRQIVSASRDRTIKLWNTLGECKYTISEGDGHKEWVSCVRFSPNTLVPT 165
Query: 178 CASGGKDMKAMLWDLNDGK----------HLHTLDQMISSRPCASHPTDTGYVLLSDL 321
S D +W+L + K +L+T+ CAS D G +LL DL
Sbjct: 166 IVSASWDKTVKVWNLQNCKLRNSLVGHSGYLNTVAVSPDGSLCASGGKD-GVILLWDL 222
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +1
Query: 55 VSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWD 219
+S WD +++W L + +GH+ + +V S D S +D LW+
Sbjct: 79 LSGSWDGELRLWDLATGETTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWN 133
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 130 bits (314), Expect = 1e-30
Identities = 57/83 (68%), Positives = 66/83 (79%)
Frame = +1
Query: 4 DWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCA 183
+WVSCVRFSPN P IVS WD+TVKVW+L NCKL+ GHSGYLNTV VSPDGSLCA
Sbjct: 150 EWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQNCKLRNTLAGHSGYLNTVAVSPDGSLCA 209
Query: 184 SGGKDMKAMLWDLNDGKHLHTLD 252
SGGKD +LWDL +GK L++L+
Sbjct: 210 SGGKDGVILLWDLAEGKKLYSLE 232
Score = 87.4 bits (207), Expect = 9e-18
Identities = 43/85 (50%), Positives = 55/85 (64%), Gaps = 8/85 (9%)
Frame = +3
Query: 246 LRPNDIITALCFSPNRYWLCAAFGPSIKIWDLESKEMVEELRPEIINQTQT--------S 401
L II +LCFSPNRYWLCAA SI+IWDLESK +VE+L+ ++ + + +
Sbjct: 231 LEAGSIIHSLCFSPNRYWLCAATENSIRIWDLESKSVVEDLKVDLKAEAEKTDGSTGIGN 290
Query: 402 KTDPPQCLSLAWSTDGQTLFAGYSD 476
KT C SL WS DG TLF+GY+D
Sbjct: 291 KTKVIYCTSLNWSADGNTLFSGYTD 315
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKIN-----HLGHSGYLNTVTVSP 165
+D V+ + +P + +IV+ D+++ +W LT GHS ++ V +S
Sbjct: 15 TDMVTAIA-TPVDNSDVIVTSSRDKSIILWKLTKEDKSYGVAQRRMTGHSHFVQDVVLSS 73
Query: 166 DGSLCASGGKDMKAMLWDLNDGK 234
DG SG D + LWDL G+
Sbjct: 74 DGQFALSGSWDGELRLWDLATGE 96
Score = 38.3 bits (85), Expect = 0.006
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWH-LTNCKLKINHL-GHSGYLNTVTVSPDGSL-- 177
V V FS + N IVS DRT+K+W+ L CK I+ GH +++ V SP+ +
Sbjct: 108 VLSVAFSTD--NRQIVSASRDRTIKLWNTLGECKYTISEADGHKEWVSCVRFSPNTLVPT 165
Query: 178 CASGGKDMKAMLWDLNDGKHLHTL 249
S D +W+L + K +TL
Sbjct: 166 IVSASWDKTVKVWNLQNCKLRNTL 189
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +1
Query: 55 VSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWD 219
+S WD +++W L + +GH+ + +V S D S +D LW+
Sbjct: 79 LSGSWDGELRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWN 133
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 130 bits (314), Expect = 1e-30
Identities = 55/83 (66%), Positives = 67/83 (80%)
Frame = +1
Query: 4 DWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCA 183
DWVSCVRFSPN P IVS WD+TVKVW+L+NCKL+ GH+GY++TV VSPDGSLCA
Sbjct: 151 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCA 210
Query: 184 SGGKDMKAMLWDLNDGKHLHTLD 252
SGGKD +LWDL +GK L++L+
Sbjct: 211 SGGKDGVVLLWDLAEGKKLYSLE 233
Score = 90.2 bits (214), Expect = 1e-18
Identities = 43/85 (50%), Positives = 54/85 (63%), Gaps = 8/85 (9%)
Frame = +3
Query: 246 LRPNDIITALCFSPNRYWLCAAFGPSIKIWDLESKEMVEELRPEIINQTQTSKTDPP--- 416
L N +I ALCFSPNRYWLCAA IKIWDLESK +VE+L+ ++ + + + P
Sbjct: 232 LEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAAT 291
Query: 417 -----QCLSLAWSTDGQTLFAGYSD 476
C SL WS DG TLF+GY+D
Sbjct: 292 KRKVIYCTSLNWSADGSTLFSGYTD 316
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCK-----LKINHLGHSGYLNTVTVSP 165
+D V+ + ++A+ IIVS D+++ +W LT + GHS ++ V +S
Sbjct: 15 TDMVTAIATPIDNAD-IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS 73
Query: 166 DGSLCASGGKDMKAMLWDLNDG 231
DG SG D + LWDL G
Sbjct: 74 DGQFALSGSWDGELRLWDLAAG 95
Score = 35.5 bits (78), Expect = 0.039
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +1
Query: 43 NPIIVSCGWDRTVKVWH-LTNCKLKINH--LGHSGYLNTVTVSPD--GSLCASGGKDMKA 207
N IVS DRT+K+W+ L CK I+ GH +++ V SP+ S D
Sbjct: 117 NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV 176
Query: 208 MLWDLNDGKHLHTL 249
+W+L++ K TL
Sbjct: 177 KVWNLSNCKLRSTL 190
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +1
Query: 55 VSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWD 219
+S WD +++W L +GH+ + +V S D S +D LW+
Sbjct: 79 LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 133
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 52.8 bits (121), Expect = 2e-07
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Frame = +1
Query: 7 WVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCAS 186
WV V F P+ N + DRT+K+W + LK+ GH G + + VS + S
Sbjct: 172 WVRSVAFDPS--NEWFCTGSADRTIKIWDVATGVLKLTLTGHIGQVRGLAVSNRHTYMFS 229
Query: 187 GGKDMKAMLWDLNDGKHLHTLDQMISSRPC-ASHPTDTGYVLLSDLPSRSGIWKAR 351
G D + WDL K + + + C A HPT VL S +W R
Sbjct: 230 AGDDKQVKCWDLEQNKVIRSYHGHLHGVYCLALHPT-LDVVLTGGRDSVCRVWDIR 284
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/113 (23%), Positives = 45/113 (39%)
Frame = +1
Query: 58 SCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKH 237
S G D+ VK W L K+ ++ GH + + + P + +GG+D +WD+
Sbjct: 229 SAGDDKQVKCWDLEQNKVIRSYHGHLHGVYCLALHPTLDVVLTGGRDSVCRVWDIRTKMQ 288
Query: 238 LHTLDQMISSRPCASHPTDTGYVLLSDLPSRSGIWKARRWLKSSGLKSLTKHK 396
+ L + PTD V+ S W R + ++T HK
Sbjct: 289 IFVLPHDSDVFSVLARPTDP-QVITGSHDSTIKFWDLR---YGKSMATITNHK 337
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +1
Query: 127 GHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDG 231
GH G++ +V P +G D +WD+ G
Sbjct: 168 GHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATG 202
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 52.0 bits (119), Expect = 4e-07
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Frame = +1
Query: 49 IIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLND 228
+ SCG D +VW L + + GH + +V SP+G ASGG+D + +WDL
Sbjct: 395 LAASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRM 454
Query: 229 GKHLHTLDQMISSRPCASHPTDTGYVL-LSDLPSRSGIWKARRWLKSSGLKSLTKHK 396
K L+ + + + GY L + + IW R + S +KSL H+
Sbjct: 455 RKSLYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIWSGRDF---SLVKSLAGHE 508
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +1
Query: 4 DWVSCVRFSPNHANPIIVSCGWDRTVKVWHL-TNCKLKINHLGHSGYLNTVTVSPDGSLC 180
D ++ V F P+ + + +D+T ++W + T +L + GHS + + DG+L
Sbjct: 340 DRLARVAFHPS--GKYLGTTSYDKTWRLWDINTGAELLLQE-GHSRSVYGIAFQQDGALA 396
Query: 181 ASGGKDMKAMLWDLNDGKHL 240
AS G D A +WDL G+ +
Sbjct: 397 ASCGLDSLARVWDLRTGRSI 416
Score = 35.9 bits (79), Expect = 0.029
Identities = 24/74 (32%), Positives = 31/74 (41%)
Frame = +1
Query: 19 VRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKD 198
V FSP + + + DRT K+W T+ L GH L V P G + D
Sbjct: 304 VVFSP--VDDCLATASADRTAKLWK-TDGTLLQTFEGHLDRLARVAFHPSGKYLGTTSYD 360
Query: 199 MKAMLWDLNDGKHL 240
LWD+N G L
Sbjct: 361 KTWRLWDINTGAEL 374
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
VS V++ P + + +D V +W + L + GH + ++ ++ D S A+
Sbjct: 468 VSQVKYEPQEGY-FLATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDITADSSCIATV 526
Query: 190 GKDMKAMLW 216
D LW
Sbjct: 527 SHDRTIKLW 535
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 51.6 bits (118), Expect = 6e-07
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLC 180
+++V CV F+P + +IVS +D T+++W + K HS +++V + DGSL
Sbjct: 128 TNFVFCVNFNP--PSNLIVSGSFDETIRIWEVKTGKCVRMIKAHSMPISSVHFNRDGSLI 185
Query: 181 ASGGKDMKAMLWDLNDGKHLHTL-DQMISSRPCASHPTDTGYVLLSDLPS 327
S D +WD +G L TL D + A + ++L++ L S
Sbjct: 186 VSASHDGSCKIWDAKEGTCLKTLIDDKSPAVSFAKFSPNGKFILVATLDS 235
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/70 (32%), Positives = 35/70 (50%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
+SCV+FS N N ++ S D+T+ +W TN L + GHS ++ + S D S
Sbjct: 46 ISCVKFS-NDGN-LLASASVDKTMILWSATNYSLIHRYEGHSSGISDLAWSSDSHYTCSA 103
Query: 190 GKDMKAMLWD 219
D +WD
Sbjct: 104 SDDCTLRIWD 113
Score = 36.7 bits (81), Expect = 0.017
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Frame = +1
Query: 70 DRTVKVWHLTNCKLKINHL-GHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHT 246
D T+++W + + L GH+ ++ V +P +L SG D +W++ GK +
Sbjct: 106 DCTLRIWDARSPYECLKVLRGHTNFVFCVNFNPPSNLIVSGSFDETIRIWEVKTGKCVRM 165
Query: 247 LDQMISSRPCAS-HPTDTGYVLLSDLPSRS-GIWKARRWLKSSGLKSLTKHKLPRQTLLS 420
+ S P +S H G +++S S IW A+ + + LK+L K P +
Sbjct: 166 I--KAHSMPISSVHFNRDGSLIVSASHDGSCKIWDAK---EGTCLKTLIDDKSPAVSFAK 220
Query: 421 VSP 429
SP
Sbjct: 221 FSP 223
Score = 34.3 bits (75), Expect = 0.090
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = +1
Query: 127 GHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMISSRPCASHPTDTGYV 306
GH+ ++ V S DG+L AS D +LW + +H + S + +D+ Y
Sbjct: 41 GHTAAISCVKFSNDGNLLASASVDKTMILWSATNYSLIHRYEGHSSGISDLAWSSDSHYT 100
Query: 307 LLSDLPSRSGIWKAR 351
+ IW AR
Sbjct: 101 CSASDDCTLRIWDAR 115
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 50.4 bits (115), Expect = 1e-06
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Frame = +1
Query: 7 WVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCAS 186
WV V F P+ N + DRT+K+W + LK+ GH + + VS + S
Sbjct: 178 WVRSVAFDPS--NEWFCTGSADRTIKIWDVATGVLKLTLTGHIEQVRGLAVSNRHTYMFS 235
Query: 187 GGKDMKAMLWDLNDGKHLHTLDQMISSRPC-ASHPTDTGYVLLSDLPSRSGIWKAR 351
G D + WDL K + + +S C A HPT +L S +W R
Sbjct: 236 AGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPT-LDVLLTGGRDSVCRVWDIR 290
Score = 35.9 bits (79), Expect = 0.029
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
Frame = +1
Query: 58 SCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKH 237
S G D+ VK W L K+ ++ GH + + + P + +GG+D +WD+
Sbjct: 235 SAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVCRVWDIRTKMQ 294
Query: 238 LHTL---DQMISSRPCASHPTDTGYVLLSDLPSRSGIWKARRWLKSSGLKSLTKHK 396
+ L D + S + PTD V+ + W R + +LT HK
Sbjct: 295 IFALSGHDNTVCS--VFTRPTDP-QVVTGSHDTTIKFWDLR---YGKTMSTLTHHK 344
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +1
Query: 127 GHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDG 231
GH G++ +V P +G D +WD+ G
Sbjct: 174 GHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATG 208
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/71 (35%), Positives = 33/71 (46%)
Frame = +1
Query: 34 NHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAML 213
N ++ SC D T VW N + + GHSG + +S D S +G D A L
Sbjct: 46 NRNGDLLFSCAKDHTPTVWFADNGERLGTYRGHSGAVWCCDISRDSSRLITGSADQTAKL 105
Query: 214 WDLNDGKHLHT 246
WD+ GK L T
Sbjct: 106 WDVKSGKELFT 116
Score = 35.5 bits (78), Expect = 0.039
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Frame = +1
Query: 43 NPIIVSCGWDRTVKVWHLTNCKL---KINHLGHSGYLNTVTVSPDGSLCASGGKDMKAML 213
N IVS G D +++W KL +GH + ++ + D S +G D A L
Sbjct: 187 NQTIVSGGEDAAIRIWDAETGKLLKQSDEEVGHKEAITSLCKAADDSHFLTGSHDKTAKL 246
Query: 214 WDLNDGKHLHTLDQMISSRPCASHP 288
WD+ + T ++ A P
Sbjct: 247 WDMRTLTLIKTYTTVVPVNAVAMSP 271
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 127 GHSGYLNTVTVSPDGSLCASGGKD 198
GH G +N + SPDG +SGG+D
Sbjct: 315 GHFGPINALAFSPDGKSFSSGGED 338
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Frame = +1
Query: 142 LNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMISSRPCAS---HPTDTGYVLL 312
+N P SGG+D +WD GK L D+ + + + D + L
Sbjct: 178 INRAVWGPLNQTIVSGGEDAAIRIWDAETGKLLKQSDEEVGHKEAITSLCKAADDSHFLT 237
Query: 313 SDLPSRSGIWKAR 351
+ +W R
Sbjct: 238 GSHDKTAKLWDMR 250
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/71 (33%), Positives = 33/71 (46%)
Frame = +1
Query: 34 NHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAML 213
N ++ SC D T +W N + + GH+G + VS D S +G D A L
Sbjct: 19 NREGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKL 78
Query: 214 WDLNDGKHLHT 246
WD+ GK L T
Sbjct: 79 WDVKSGKELFT 89
Score = 35.1 bits (77), Expect = 0.051
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +1
Query: 43 NPIIVSCGWDRTVKVWHLTNCKL---KINHLGHSGYLNTVTVSPDGSLCASGGKDMKAML 213
N IVS G D+ +++W KL +GH + ++ + D S +G D A L
Sbjct: 160 NQTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKL 219
Query: 214 WDL 222
WD+
Sbjct: 220 WDM 222
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Frame = +1
Query: 142 LNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMISSR---PCASHPTDTGYVLL 312
+N P SGG+D +WD GK L D+ + + D + L
Sbjct: 151 INRAVWGPLNQTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLT 210
Query: 313 SDLPSRSGIWKAR 351
L + +W R
Sbjct: 211 GSLDKTAKLWDMR 223
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/71 (33%), Positives = 33/71 (46%)
Frame = +1
Query: 34 NHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAML 213
N ++ SC D T +W N + + GH+G + VS D S +G D A L
Sbjct: 19 NREGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKL 78
Query: 214 WDLNDGKHLHT 246
WD+ GK L T
Sbjct: 79 WDVKSGKELFT 89
Score = 35.1 bits (77), Expect = 0.051
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +1
Query: 43 NPIIVSCGWDRTVKVWHLTNCKL---KINHLGHSGYLNTVTVSPDGSLCASGGKDMKAML 213
N IVS G D+ +++W KL +GH + ++ + D S +G D A L
Sbjct: 160 NQTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKL 219
Query: 214 WDL 222
WD+
Sbjct: 220 WDM 222
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Frame = +1
Query: 142 LNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMISSR---PCASHPTDTGYVLL 312
+N P SGG+D +WD GK L D+ + + D + L
Sbjct: 151 INRAVWGPLNQTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLT 210
Query: 313 SDLPSRSGIWKAR 351
L + +W R
Sbjct: 211 GSLDKTAKLWDMR 223
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 127 GHSGYLNTVTVSPDGSLCASGGKD 198
GH G +N + +PDG +SGG+D
Sbjct: 288 GHFGPINALAFNPDGKSFSSGGED 311
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/71 (33%), Positives = 33/71 (46%)
Frame = +1
Query: 34 NHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAML 213
N ++ SC D T +W N + + GH+G + VS D S +G D A L
Sbjct: 19 NREGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKL 78
Query: 214 WDLNDGKHLHT 246
WD+ GK L T
Sbjct: 79 WDVKSGKELFT 89
Score = 35.1 bits (77), Expect = 0.051
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +1
Query: 43 NPIIVSCGWDRTVKVWHLTNCKL---KINHLGHSGYLNTVTVSPDGSLCASGGKDMKAML 213
N IVS G D+ +++W KL +GH + ++ + D S +G D A L
Sbjct: 160 NQTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKL 219
Query: 214 WDL 222
WD+
Sbjct: 220 WDM 222
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Frame = +1
Query: 142 LNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMISSR---PCASHPTDTGYVLL 312
+N P SGG+D +WD GK L D+ + + D + L
Sbjct: 151 INRAVWGPLNQTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLT 210
Query: 313 SDLPSRSGIWKAR 351
L + +W R
Sbjct: 211 GSLDKTAKLWDMR 223
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 127 GHSGYLNTVTVSPDGSLCASGGKD 198
GH G +N + +PDG +SGG+D
Sbjct: 288 GHFGPINALAFNPDGKSFSSGGED 311
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/77 (33%), Positives = 36/77 (46%)
Frame = +1
Query: 13 SCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGG 192
S V F P + S D +K+W + + GHS ++T+ +PDG SGG
Sbjct: 104 SAVEFHP--FGEFLASGSSDANLKIWDIRKKGCIQTYKGHSRGISTIRFTPDGRWVVSGG 161
Query: 193 KDMKAMLWDLNDGKHLH 243
D +WDL GK LH
Sbjct: 162 LDNVVKVWDLTAGKLLH 178
Score = 45.2 bits (102), Expect = 5e-05
Identities = 26/71 (36%), Positives = 35/71 (49%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
+S +RF+P+ +VS G D VKVW LT KL H G + ++ P L A+G
Sbjct: 145 ISTIRFTPD--GRWVVSGGLDNVVKVWDLTAGKLLHEFKFHEGPIRSLDFHPLEFLLATG 202
Query: 190 GKDMKAMLWDL 222
D WDL
Sbjct: 203 SADRTVKFWDL 213
Score = 35.1 bits (77), Expect = 0.051
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = +1
Query: 40 ANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWD 219
A ++++ +K+W + K+ GH + V P G ASG D +WD
Sbjct: 69 AEVLVLAGASSGVIKLWDVEEAKMVRAFTGHRSNCSAVEFHPFGEFLASGSSDANLKIWD 128
Query: 220 L 222
+
Sbjct: 129 I 129
Score = 34.7 bits (76), Expect = 0.068
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +3
Query: 264 ITALCFSPNRYWLCAAFGP-SIKIWDLESKEMVEELRPEIINQTQTSKTDPPQCLSLAWS 440
I +L F P + L ++K WDLE+ E++ RPE S+ +
Sbjct: 187 IRSLDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEATG-----------VRSIKFH 235
Query: 441 TDGQTLFAGYSDNTKEFGRFP 503
DG+TLF G D+ K + P
Sbjct: 236 PDGRTLFCGLDDSLKVYSWEP 256
>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 7 WD-40 repeats (PF00400)
Length = 418
Score = 48.4 bits (110), Expect = 5e-06
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDG 231
I S WD+T+K+W ++ + K + H +N + VS +G++ +G D + +W G
Sbjct: 208 IYSVSWDKTLKIWRASDLRCKESIKAHDDAVNAIAVSTNGTV-YTGSADRRIRVWAKPTG 266
Query: 232 KHLHTLDQMISSRPCASHP---TDTGYVLLSDLPSRS 333
+ HTL + A + D G VL S RS
Sbjct: 267 EKRHTLVATLEKHKSAVNALALNDDGSVLFSGSCDRS 303
Score = 30.7 bits (66), Expect = 1.1
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Frame = +1
Query: 70 DRTVKVWHLTNCKLKINHLG----HSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKH 237
DR ++VW + + + H +N + ++ DGS+ SG D ++W+ D +
Sbjct: 255 DRRIRVWAKPTGEKRHTLVATLEKHKSAVNALALNDDGSVLFSGSCDRSILVWEREDTSN 314
Query: 238 LHTLDQMISSRPCASHPT-DTGYVLLSDLPSRS-GIWKARRWLKSSGLKSLTKHKLPRQT 411
+ + A + +LLS R+ IW+ S L+ L+ H P ++
Sbjct: 315 YMAVRGALRGHDKAILSLFNVSDLLLSGSADRTVRIWRRGPDSSYSCLEVLSGHTKPVKS 374
Query: 412 LLSV 423
L +V
Sbjct: 375 LAAV 378
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 48.0 bits (109), Expect = 7e-06
Identities = 24/81 (29%), Positives = 41/81 (50%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLC 180
SD ++ + SP+ + ++ S G R ++VW L K + GH G + + G L
Sbjct: 60 SDTLTALALSPD--DKLLFSAGHSRQIRVWDLETLKCIRSWKGHEGPVMGMACHASGGLL 117
Query: 181 ASGGKDMKAMLWDLNDGKHLH 243
A+ G D K ++WD++ G H
Sbjct: 118 ATAGADRKVLVWDVDGGFCTH 138
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLT--NCKLKINHL--GHSGYLNTVTVSPDGSL 177
VS + F P+ I++S D TV+VW L N + K + H + ++ +S DG
Sbjct: 147 VSSILFHPDSNKNILISGSDDATVRVWDLNAKNTEKKCLAIMEKHFSAVTSIALSEDGLT 206
Query: 178 CASGGKDMKAMLWDLND 228
S G+D LWDL+D
Sbjct: 207 LFSAGRDKVVNLWDLHD 223
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDG 231
+++ D+TVK+W +++ GH+ + + DG+ S G D LW++N
Sbjct: 556 VMTASGDKTVKIWAISDGSCLKTFEGHTSSVLRASFITDGTQFVSCGADGLLKLWNVNTS 615
Query: 232 KHLHTLDQ 255
+ + T DQ
Sbjct: 616 ECIATYDQ 623
Score = 34.7 bits (76), Expect = 0.068
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +1
Query: 70 DRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTL 249
DRT +W L + + GH + +V S + D +W ++DG L T
Sbjct: 520 DRTASIWRLPDLVHVVTLKGHKRRIFSVEFSTVDQCVMTASGDKTVKIWAISDGSCLKTF 579
Query: 250 DQMISSRPCASHPTD 294
+ SS AS TD
Sbjct: 580 EGHTSSVLRASFITD 594
Score = 32.3 bits (70), Expect = 0.36
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +1
Query: 55 VSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDL 222
++C + + T+ +K G S L + +SPD L S G + +WDL
Sbjct: 34 IACACGDVINIVDSTDSSVKSTIEGESDTLTALALSPDDKLLFSAGHSRQIRVWDL 89
Score = 31.5 bits (68), Expect = 0.63
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +1
Query: 55 VSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLW 216
VSCG D +K+W++ + + H + + V + A+GG D LW
Sbjct: 599 VSCGADGLLKLWNVNTSECIATYDQHEDKVWALAVGKKTEMIATGGGDAVINLW 652
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 43 NPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDG-SLCASGGKDMKAMLWD 219
N +IV+ D+TV++W+ T+ GH+G + V + S SG D +W
Sbjct: 416 NVLIVTGSKDKTVRLWNATSKSCIGVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVWS 475
Query: 220 LN 225
L+
Sbjct: 476 LD 477
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 48.0 bits (109), Expect = 7e-06
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNC-KLKINHLGHSGYLNTVTVSPDGSLCAS 186
VS +RF P + +++S G D VK+W + N K ++GH+ + + S DGS +
Sbjct: 285 VSAIRFFPKQGH-LLLSAGMDCKVKIWDVYNSGKCMRTYMGHAKAVRDICFSNDGSKFLT 343
Query: 187 GGKDMKAMLWDLNDGKHLHT 246
G D WD G+ + T
Sbjct: 344 AGYDKNIKYWDTETGQVIST 363
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +1
Query: 127 GH--SGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTL 249
GH +GY V SPDG SG + K WD K TL
Sbjct: 498 GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 540
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 47.6 bits (108), Expect = 9e-06
Identities = 30/111 (27%), Positives = 45/111 (40%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
+S V FS + IVS D+T+K+W + L +GH+ Y V +P ++ SG
Sbjct: 74 ISDVAFSSDAR--FIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSNMIVSG 131
Query: 190 GKDMKAMLWDLNDGKHLHTLDQMISSRPCASHPTDTGYVLLSDLPSRSGIW 342
D +WD+ GK L L D ++ S IW
Sbjct: 132 SFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIW 182
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/83 (32%), Positives = 41/83 (49%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLC 180
+++ CV F+P + +IVS +D TV++W +T K HS + V + DGSL
Sbjct: 113 TNYAFCVNFNPQ--SNMIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLI 170
Query: 181 ASGGKDMKAMLWDLNDGKHLHTL 249
S D +WD G + TL
Sbjct: 171 VSSSYDGLCRIWDSGTGHCVKTL 193
Score = 34.7 bits (76), Expect = 0.068
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHL-TNCKLKINHLGHSGYLNTVTVSPDGSL 177
SD V+ V F N +IVS +D ++W T +K + ++ V SP+G
Sbjct: 155 SDPVTAVDF--NRDGSLIVSSSYDGLCRIWDSGTGHCVKTLIDDENPPVSFVRFSPNGKF 212
Query: 178 CASGGKDMKAMLWDLNDGKHLHTLDQMISSRPCAS 282
G D LW+++ K L T ++++ C S
Sbjct: 213 ILVGTLDNTLRLWNISSAKFLKTYTGHVNAQYCIS 247
Score = 34.3 bits (75), Expect = 0.090
Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 5/116 (4%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKI-----NHLGHSGYLNTVTVSPDGS 174
VS V+FS + ++ S D+T++ + + I GH ++ V S D
Sbjct: 27 VSSVKFSSD--GRLLASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDVAFSSDAR 84
Query: 175 LCASGGKDMKAMLWDLNDGKHLHTLDQMISSRPCASHPTDTGYVLLSDLPSRSGIW 342
S D LWD+ G + TL + C + + ++ IW
Sbjct: 85 FIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSNMIVSGSFDETVRIW 140
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLW 216
IVS D V +W L + KL GH+ + V P +L ASG D +W
Sbjct: 258 IVSGSEDNCVHMWELNSKKLLQKLEGHTETVMNVACHPTENLIASGSLDKTVRIW 312
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/77 (29%), Positives = 36/77 (46%)
Frame = +1
Query: 13 SCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGG 192
+CV + + S D +K+W + + GH+ +N + +PDG SGG
Sbjct: 196 NCVSVNFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWIVSGG 255
Query: 193 KDMKAMLWDLNDGKHLH 243
+D +WDL GK LH
Sbjct: 256 EDNVVKVWDLTAGKLLH 272
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/71 (38%), Positives = 35/71 (49%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
V+ +RF+P+ IVS G D VKVW LT KL H G + ++ P L A+G
Sbjct: 239 VNVLRFTPD--GRWIVSGGEDNVVKVWDLTAGKLLHEFKSHEGKIQSLDFHPHEFLLATG 296
Query: 190 GKDMKAMLWDL 222
D WDL
Sbjct: 297 SADKTVKFWDL 307
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
V+C++ ++ ++V+ G D V +W + ++ GHS +++VT L A+G
Sbjct: 112 VNCLKIG-RKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEGLVAAG 170
Query: 190 GKDMKAMLWDLNDGKHLHTLDQMISSRPCAS---HPTDTGYVLLSDLPSRSGIWKARR 354
LWDL + K + TL S+ C S HP + L + IW R+
Sbjct: 171 AASGTIKLWDLEEAKVVRTLTGHRSN--CVSVNFHPFGE-FFASGSLDTNLKIWDIRK 225
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +1
Query: 76 TVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHT 246
T+K+W L K+ GH +V P G ASG D +WD+ +HT
Sbjct: 175 TIKLWDLEEAKVVRTLTGHRSNCVSVNFHPFGEFFASGSLDTNLKIWDIRKKGCIHT 231
>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
related to En/Spm transposon family of maize
Length = 465
Score = 47.2 bits (107), Expect = 1e-05
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLC 180
+D VSC+ S N ++ S WDRT+KVW + + K + H +N+V VS ++
Sbjct: 206 ADAVSCL--SLNDEQGLLYSASWDRTIKVWRIADSKCLESIPAHDDAVNSV-VSTTEAIV 262
Query: 181 ASGGKDMKAMLWDLN-DGKHL-HTLDQMISSRPCA 279
SG D W + GK+ HTL Q ++ + A
Sbjct: 263 FSGSADGTVKAWKRDQQGKYTKHTLMQTLTKQESA 297
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/71 (36%), Positives = 35/71 (49%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
V+ +RF+P+ +VS G D VKVW LT KL H G + ++ P L A+G
Sbjct: 146 VNVLRFTPD--GRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATG 203
Query: 190 GKDMKAMLWDL 222
D WDL
Sbjct: 204 SADRTVKFWDL 214
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/76 (27%), Positives = 34/76 (44%)
Frame = +1
Query: 13 SCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGG 192
+C+ + S D +K+W + + GH+ +N + +PDG SGG
Sbjct: 103 NCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGG 162
Query: 193 KDMKAMLWDLNDGKHL 240
+D +WDL GK L
Sbjct: 163 EDNIVKVWDLTAGKLL 178
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/80 (27%), Positives = 40/80 (50%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
V+C++ ++ ++V+ G D V +W + ++ GHS +++VT L A+G
Sbjct: 19 VNCLKIG-RKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAG 77
Query: 190 GKDMKAMLWDLNDGKHLHTL 249
LWDL + K + TL
Sbjct: 78 AASGTIKLWDLEEAKIVRTL 97
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 40 ANPIIVSCGW-DRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLW 216
A+ ++V+ G T+K+W L K+ GH +V P G ASG D +W
Sbjct: 69 ASEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIW 128
Query: 217 DLNDGKHLHT 246
D+ +HT
Sbjct: 129 DIRKKGCIHT 138
Score = 31.9 bits (69), Expect = 0.48
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +3
Query: 264 ITALCFSPNRYWLCAAFGP-SIKIWDLESKEMVEELRPEIINQTQTSKTDPPQCLSLAWS 440
I +L F P+ + L ++K WDLE+ E++ PE T +CLS ++
Sbjct: 188 IQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPE---------TAGVRCLS--FN 236
Query: 441 TDGQTLFAGYSDNTKEFGRFP 503
DG+T+ G ++ K F P
Sbjct: 237 PDGKTVLCGLQESLKIFSWEP 257
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/71 (36%), Positives = 35/71 (49%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
V+ +RF+P+ +VS G D VKVW LT KL H G + ++ P L A+G
Sbjct: 146 VNVLRFTPD--GRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATG 203
Query: 190 GKDMKAMLWDL 222
D WDL
Sbjct: 204 SADRTVKFWDL 214
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/76 (27%), Positives = 34/76 (44%)
Frame = +1
Query: 13 SCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGG 192
+C+ + S D +K+W + + GH+ +N + +PDG SGG
Sbjct: 103 NCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGG 162
Query: 193 KDMKAMLWDLNDGKHL 240
+D +WDL GK L
Sbjct: 163 EDNIVKVWDLTAGKLL 178
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/80 (27%), Positives = 40/80 (50%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
V+C++ ++ ++V+ G D V +W + ++ GHS +++VT L A+G
Sbjct: 19 VNCLKIG-RKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAG 77
Query: 190 GKDMKAMLWDLNDGKHLHTL 249
LWDL + K + TL
Sbjct: 78 AASGTIKLWDLEEAKIVRTL 97
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 40 ANPIIVSCGW-DRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLW 216
A+ ++V+ G T+K+W L K+ GH +V P G ASG D +W
Sbjct: 69 ASEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIW 128
Query: 217 DLNDGKHLHT 246
D+ +HT
Sbjct: 129 DIRKKGCIHT 138
Score = 31.9 bits (69), Expect = 0.48
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +3
Query: 264 ITALCFSPNRYWLCAAFGP-SIKIWDLESKEMVEELRPEIINQTQTSKTDPPQCLSLAWS 440
I +L F P+ + L ++K WDLE+ E++ PE T +CLS ++
Sbjct: 188 IQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPE---------TAGVRCLS--FN 236
Query: 441 TDGQTLFAGYSDNTKEFGRFP 503
DG+T+ G ++ K F P
Sbjct: 237 PDGKTVLCGLQESLKIFSWEP 257
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +1
Query: 4 DWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCA 183
D VSC+ +PN+ I S D +++W +++ + GH G + +T S DG++
Sbjct: 57 DGVSCMAKNPNYLKGIF-SASMDGDIRLWDISSRRTVCQFPGHQGAVRGLTASTDGNVLV 115
Query: 184 SGGKDMKAMLWDL 222
S G D LW++
Sbjct: 116 SCGTDCTVRLWNV 128
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 46.8 bits (106), Expect = 2e-05
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Frame = +1
Query: 58 SCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKH 237
S G+D +VW L + + GH + +V SP+G ASGG+D + +WDL K
Sbjct: 147 SSGFDSLARVWDLRTARNILIFQGHIKQVLSVDFSPNGYHLASGGEDNQCRIWDLRMRKL 206
Query: 238 LHTLDQMISSRPCASH-PTDTGYVLLSDLPSRSGIWKARRWLKSSGLKSLTKHK 396
L+ + ++ + P + ++ + IW R + S +KSL H+
Sbjct: 207 LYIIPAHVNLVSQVKYEPQERYFLATASHDMNVNIWSGRDF---SLVKSLVGHE 257
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/77 (33%), Positives = 35/77 (45%)
Frame = +1
Query: 13 SCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGG 192
S V F P + S D ++VW + GH+ ++T+ SPDG SGG
Sbjct: 53 SAVEFHP--FGEFLASGSSDTNLRVWDTRKKGCIQTYKGHTRGISTIEFSPDGRWVVSGG 110
Query: 193 KDMKAMLWDLNDGKHLH 243
D +WDL GK LH
Sbjct: 111 LDNVVKVWDLTAGKLLH 127
Score = 46.0 bits (104), Expect = 3e-05
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
+S + FSP+ +VS G D VKVW LT KL H G + ++ P L A+G
Sbjct: 94 ISTIEFSPD--GRWVVSGGLDNVVKVWDLTAGKLLHEFKCHEGPIRSLDFHPLEFLLATG 151
Query: 190 GKDMKAMLWDLNDGKHLHTL-DQMISSRPCASHP 288
D WDL + + T + R A HP
Sbjct: 152 SADRTVKFWDLETFELIGTTRPEATGVRAIAFHP 185
Score = 36.3 bits (80), Expect = 0.022
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +3
Query: 264 ITALCFSPNRYWLCAAFGP-SIKIWDLESKEMVEELRPEIINQTQTSKTDPPQCLSLAWS 440
I +L F P + L ++K WDLE+ E++ RPE ++A+
Sbjct: 136 IRSLDFHPLEFLLATGSADRTVKFWDLETFELIGTTRPEATGVR-----------AIAFH 184
Query: 441 TDGQTLFAGYSDNTKEFGRFP 503
DGQTLF G D K + P
Sbjct: 185 PDGQTLFCGLDDGLKVYSWEP 205
Score = 34.7 bits (76), Expect = 0.068
Identities = 16/62 (25%), Positives = 25/62 (40%)
Frame = +1
Query: 34 NHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAML 213
N ++++ +K+W L K+ GH + V P G ASG D +
Sbjct: 16 NSEEVLVLAGASSGVIKLWDLEESKMVRAFTGHRSNCSAVEFHPFGEFLASGSSDTNLRV 75
Query: 214 WD 219
WD
Sbjct: 76 WD 77
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +1
Query: 49 IIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLW 216
+++S D T+K+W + KLK + GH+ + V SPDG SGGKD LW
Sbjct: 416 LLLSGSKDSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPDGEKVVSGGKDRVLKLW 471
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/75 (33%), Positives = 34/75 (45%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
V CV FSP+ + S D TV++W L GH ++ TV SPDG SG
Sbjct: 112 VLCVSFSPDGKQ--LASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPDGKHLVSG 169
Query: 190 GKDMKAMLWDLNDGK 234
K + W+ G+
Sbjct: 170 SKSGEICCWNPKKGE 184
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/75 (30%), Positives = 37/75 (49%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
V+ V FSP+ I S +D++V++W+ + GH G + V+ S D L SG
Sbjct: 363 VNHVYFSPD--GKWIASASFDKSVRLWNGITGQFVTVFRGHVGPVYQVSWSADSRLLLSG 420
Query: 190 GKDMKAMLWDLNDGK 234
KD +W++ K
Sbjct: 421 SKDSTLKIWEIRTKK 435
Score = 35.1 bits (77), Expect = 0.051
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 1/101 (0%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHLTNCKLKINHL-GHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLND 228
+VS D T+ +W + K L GH +N V SPDG AS D LW+
Sbjct: 332 LVSGSDDFTMFLWEPSVSKQPKKRLTGHQQLVNHVYFSPDGKWIASASFDKSVRLWNGIT 391
Query: 229 GKHLHTLDQMISSRPCASHPTDTGYVLLSDLPSRSGIWKAR 351
G+ + + S D+ +L S IW+ R
Sbjct: 392 GQFVTVFRGHVGPVYQVSWSADSRLLLSGSKDSTLKIWEIR 432
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 127 GHSGYLNTVTVSPDGSLCASGGKDMKAMLWDL 222
GH+ + V+ SPDG ASG D LWDL
Sbjct: 107 GHAEAVLCVSFSPDGKQLASGSGDTTVRLWDL 138
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPD 168
V+CV++ + II + D T+K+W T KL GH ++N++ +S +
Sbjct: 244 VTCVKWG---GDGIIYTGSQDCTIKMWETTQGKLIRELKGHGHWINSLALSTE 293
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +3
Query: 261 IITALCFSPNRYWLCAA-FGPSIKIWDLESKEMVEELRPEIINQTQTSKTDPPQCLSLAW 437
++ + FSP+ W+ +A F S+++W+ + + V R + Q S W
Sbjct: 362 LVNHVYFSPDGKWIASASFDKSVRLWNGITGQFVTVFRGHVGPVYQVS-----------W 410
Query: 438 STDGQTLFAGYSDNT 482
S D + L +G D+T
Sbjct: 411 SADSRLLLSGSKDST 425
>At1g24130.1 68414.m03044 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats
(PF00400);similar to beta transducin-like protein
HET-D2Y (GI:17225210) [Podospora anserina].
Length = 415
Score = 46.0 bits (104), Expect = 3e-05
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Frame = +1
Query: 49 IIVSCGWDRTVKVWHLTNCK-LKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLN 225
++ S WDR+ K+W ++ K L H +N + VS DG +G D K +W+
Sbjct: 206 LLYSASWDRSFKIWRTSDFKCLDSIEKAHDDAINAIVVSKDG-FVYTGSADKKIKVWNKK 264
Query: 226 DGKH--LHTLDQMISSRPCASHPTDTGYVLLSDLPSRS 333
D KH + TL + +S+ + D G VL S RS
Sbjct: 265 DKKHSLVATLTKHLSAVNALAISED-GKVLYSGACDRS 301
Score = 35.1 bits (77), Expect = 0.051
Identities = 23/94 (24%), Positives = 43/94 (45%)
Frame = +1
Query: 112 KINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMISSRPCASHPT 291
K + H ++++ +S DGSL S D +W +D K L ++++ A +
Sbjct: 185 KCTWVHHVDAVSSLALSQDGSLLYSASWDRSFKIWRTSDFKCLDSIEKAHDDAINAIVVS 244
Query: 292 DTGYVLLSDLPSRSGIWKARRWLKSSGLKSLTKH 393
G+V + +W ++ K S + +LTKH
Sbjct: 245 KDGFVYTGSADKKIKVWN-KKDKKHSLVATLTKH 277
Score = 32.3 bits (70), Expect = 0.36
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +1
Query: 70 DRTVKVWHLTNCK--LKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWD--LN-DGK 234
D+ +KVW+ + K L H +N + +S DG + SG D ++W+ +N D +
Sbjct: 255 DKKIKVWNKKDKKHSLVATLTKHLSAVNALAISEDGKVLYSGACDRSILVWERLINGDDE 314
Query: 235 HLH 243
LH
Sbjct: 315 ELH 317
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +1
Query: 40 ANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWD 219
AN + + D+TVK+W++ KL+ GH ++ S DG + DM A LW
Sbjct: 222 ANKYLATASSDKTVKIWNVDGFKLEKVLTGHQRWVWDCVFSVDGEFLVTASSDMTARLWS 281
Query: 220 LNDGKHL 240
+ GK +
Sbjct: 282 MPAGKEV 288
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 44.8 bits (101), Expect = 6e-05
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLC 180
SD VSC+ + + ++ S WDRTVKVW + + K + H +N+VT + SL
Sbjct: 135 SDAVSCLSLAEDQG--LLYSASWDRTVKVWRIHDLKCIESIKAHDDAVNSVTTAE--SLV 190
Query: 181 ASGGKDMKAMLW--DLNDGKHLHTLDQMISSRPCA 279
+G D +W ++ + H+L Q + + A
Sbjct: 191 FTGSADGTVKVWKREIRGKRTAHSLFQTLLKQESA 225
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 44.4 bits (100), Expect = 8e-05
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +1
Query: 34 NHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAML 213
N ++VS G ++ ++VW + GH+ + + + G C SG D L
Sbjct: 222 NDTGTMLVSGGTEKVLRVWDPRTGSKSMKLRGHTDNVRVLLLDSTGRFCLSGSSDSMIRL 281
Query: 214 WDLNDGKHLHT 246
WDL + LHT
Sbjct: 282 WDLGQQRCLHT 292
Score = 34.3 bits (75), Expect = 0.090
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +1
Query: 4 DWVSCVRFSPNHANPIIVSCGWDRTVKVWH-LTNCKLKINHLGHSGYLNTVTV-SPDGSL 177
DWV+ + +VSC D TVK W L++ HS Y+ + V + + ++
Sbjct: 85 DWVNDAALA---GESTLVSCSSDTTVKTWDGLSDGVCTRTLRQHSDYVTCLAVAAKNNNV 141
Query: 178 CASGGKDMKAMLWDL 222
ASGG + +WD+
Sbjct: 142 VASGGLGGEVFIWDI 156
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 44.4 bits (100), Expect = 8e-05
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +1
Query: 34 NHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAML 213
N ++VS G ++ ++VW + GH+ + + + G C SG D L
Sbjct: 222 NDTGTMLVSGGTEKVLRVWDPRTGSKSMKLRGHTDNVRVLLLDSTGRFCLSGSSDSMIRL 281
Query: 214 WDLNDGKHLHT 246
WDL + LHT
Sbjct: 282 WDLGQQRCLHT 292
Score = 34.3 bits (75), Expect = 0.090
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +1
Query: 4 DWVSCVRFSPNHANPIIVSCGWDRTVKVWH-LTNCKLKINHLGHSGYLNTVTV-SPDGSL 177
DWV+ + +VSC D TVK W L++ HS Y+ + V + + ++
Sbjct: 85 DWVNDAALA---GESTLVSCSSDTTVKTWDGLSDGVCTRTLRQHSDYVTCLAVAAKNNNV 141
Query: 178 CASGGKDMKAMLWDL 222
ASGG + +WD+
Sbjct: 142 VASGGLGGEVFIWDI 156
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 44.4 bits (100), Expect = 8e-05
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = +1
Query: 25 FSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMK 204
FSP ++ S WD TV++W + K + H+ + TV PDG AS D +
Sbjct: 485 FSP--LTQLLASSSWDYTVRLWDVFASKGTVETFRHNHDVLTVAFRPDGKQLASSTLDGQ 542
Query: 205 AMLWDLNDGKHLHTLD 252
WD +G ++T++
Sbjct: 543 INFWDTIEGVLMYTIE 558
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/91 (25%), Positives = 36/91 (39%)
Frame = +1
Query: 85 VWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMIS 264
VW + GH +N VT SPD L A+G D K +W++ G T + +
Sbjct: 333 VWDWRTETYILKQQGHYFDVNCVTYSPDSQLLATGADDNKVKVWNVMSGTCFITFTEHTN 392
Query: 265 SRPCASHPTDTGYVLLSDLPSRSGIWKARRW 357
+ D +L + L W +R+
Sbjct: 393 AVTALHFMADNHSLLSASLDGTVRAWDFKRY 423
Score = 32.7 bits (71), Expect = 0.27
Identities = 21/73 (28%), Positives = 31/73 (42%)
Frame = +3
Query: 258 DIITALCFSPNRYWLCAAFGPSIKIWDLESKEMVEELRPEIINQTQTSKTDPPQCLSLAW 437
D + AL FSPN ++ G ++IW S + P + +T + +SL W
Sbjct: 94 DKVGALKFSPNGKFIAVGIGKLVEIW--RSPGFRRAVLP--FERVRTFANSDDKVVSLEW 149
Query: 438 STDGQTLFAGYSD 476
S D L G D
Sbjct: 150 SLDSDYLLVGSRD 162
Score = 31.5 bits (68), Expect = 0.63
Identities = 19/79 (24%), Positives = 33/79 (41%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
V+CV +SP+ + ++ + D VKVW++ + I H+ + + D S
Sbjct: 352 VNCVTYSPD--SQLLATGADDNKVKVWNVMSGTCFITFTEHTNAVTALHFMADNHSLLSA 409
Query: 190 GKDMKAMLWDLNDGKHLHT 246
D WD K+ T
Sbjct: 410 SLDGTVRAWDFKRYKNYKT 428
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 44.4 bits (100), Expect = 8e-05
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = +1
Query: 25 FSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMK 204
FSP ++ S WD TV++W + K + H+ + TV PDG AS D +
Sbjct: 525 FSP--LTQLLASSSWDYTVRLWDVFASKGTVETFRHNHDVLTVAFRPDGKQLASSTLDGQ 582
Query: 205 AMLWDLNDGKHLHTLD 252
WD +G ++T++
Sbjct: 583 INFWDTIEGVLMYTIE 598
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/91 (25%), Positives = 36/91 (39%)
Frame = +1
Query: 85 VWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMIS 264
VW + GH +N VT SPD L A+G D K +W++ G T + +
Sbjct: 373 VWDWRTETYILKQQGHYFDVNCVTYSPDSQLLATGADDNKVKVWNVMSGTCFITFTEHTN 432
Query: 265 SRPCASHPTDTGYVLLSDLPSRSGIWKARRW 357
+ D +L + L W +R+
Sbjct: 433 AVTALHFMADNHSLLSASLDGTVRAWDFKRY 463
Score = 32.7 bits (71), Expect = 0.27
Identities = 21/73 (28%), Positives = 31/73 (42%)
Frame = +3
Query: 258 DIITALCFSPNRYWLCAAFGPSIKIWDLESKEMVEELRPEIINQTQTSKTDPPQCLSLAW 437
D + AL FSPN ++ G ++IW S + P + +T + +SL W
Sbjct: 94 DKVGALKFSPNGKFIAVGIGKLVEIW--RSPGFRRAVLP--FERVRTFANSDDKVVSLEW 149
Query: 438 STDGQTLFAGYSD 476
S D L G D
Sbjct: 150 SLDSDYLLVGSRD 162
Score = 31.5 bits (68), Expect = 0.63
Identities = 19/79 (24%), Positives = 33/79 (41%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
V+CV +SP+ + ++ + D VKVW++ + I H+ + + D S
Sbjct: 392 VNCVTYSPD--SQLLATGADDNKVKVWNVMSGTCFITFTEHTNAVTALHFMADNHSLLSA 449
Query: 190 GKDMKAMLWDLNDGKHLHT 246
D WD K+ T
Sbjct: 450 SLDGTVRAWDFKRYKNYKT 468
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +1
Query: 37 HANPIIVSCGW-DRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAML 213
H N ++ G D+TV++W + + +GH + ++ +SPDG ASG +D M+
Sbjct: 508 HPNCNYIATGSSDKTVRLWDVQTGECVRIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMM 567
Query: 214 WDLNDGK 234
WDL+ +
Sbjct: 568 WDLSTAR 574
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 70 DRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHL 240
D T+ +W L+ + +GH+ + +++ S +GSL ASG D LWD+ L
Sbjct: 562 DGTIMMWDLSTARCITPLMGHNSCVWSLSYSGEGSLLASGSADCTVKLWDVTSSTKL 618
Score = 36.7 bits (81), Expect = 0.017
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 58 SCGWDRTVKVWHLTNCK-LKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGK 234
SC DRT ++W + + L+I +G+L+ V P+ + A+G D LWD+ G+
Sbjct: 477 SCSHDRTARIWSMDRIQPLRIM----AGHLSDVDWHPNCNYIATGSSDKTVRLWDVQTGE 532
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 130 HSGYLNTVTVSPDGSLCASGGKDMKAMLWDL 222
H+G LN ++S DGSL A G D +WD+
Sbjct: 352 HNG-LNCSSISHDGSLVAGGFSDSSIKVWDM 381
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 124 LGHSGYLNTVTVSPDGSLCASGGKDMKAMLW 216
LGHSG + + T SP G S D LW
Sbjct: 415 LGHSGPVYSATFSPPGDFVLSSSADTTIRLW 445
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDG 231
+ S +D TVK+W K+ + GH + ++ SP+G ASG D +W + +G
Sbjct: 514 LASASFDSTVKLWDAELGKMLCSFNGHREPVYSLAFSPNGEYIASGSLDKSIHIWSIKEG 573
Query: 232 KHLHT 246
K + T
Sbjct: 574 KIVKT 578
Score = 36.7 bits (81), Expect = 0.017
Identities = 24/82 (29%), Positives = 35/82 (42%)
Frame = +1
Query: 4 DWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCA 183
DW + V F+ + + +I C K+ K GH G +N V P GSL A
Sbjct: 414 DWRNNVSFATSSTDSMIYLC------KIGETRPAK---TFTGHQGEVNCVKWDPTGSLLA 464
Query: 184 SGGKDMKAMLWDLNDGKHLHTL 249
S D A +W++ +H L
Sbjct: 465 SCSDDSTAKIWNIKQSTFVHDL 486
Score = 35.1 bits (77), Expect = 0.051
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGS----- 174
V+CV++ P + ++ SC D T K+W++ + H+ + T+ SP G
Sbjct: 451 VNCVKWDPTGS--LLASCSDDSTAKIWNIKQSTFVHDLREHTKEIYTIRWSPTGPGTNNP 508
Query: 175 ----LCASGGKDMKAMLWDLNDGKHL 240
AS D LWD GK L
Sbjct: 509 NKQLTLASASFDSTVKLWDAELGKML 534
Score = 34.7 bits (76), Expect = 0.068
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 76 TVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDG--KHLHT 246
T + H+ N ++I GH+ + SP SL ASG D A +W + +G K +HT
Sbjct: 247 TSQTSHIPNSDVRILE-GHTSEVCACAWSPSASLLASGSGDATARIWSIPEGSFKAVHT 304
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHL----GHSGYLNTVTVSPD 168
S++V+CVRF+P+ + I VS D+ ++ C++ + L GH G + V+ SPD
Sbjct: 187 SNFVNCVRFAPDGSKFITVSS--DKKGIIYDGKTCEI-LGELSSDDGHKGSIYAVSWSPD 243
Query: 169 GSLCASGGKDMKAMLWDLND 228
G + D A +WD++D
Sbjct: 244 GKQVLTVSADKSAKIWDISD 263
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDG 231
IV+CG D V + K K++ HS ++N V +PDGS + D K +++ DG
Sbjct: 160 IVTCGEDFLVNFYEGPPFKFKLSSREHSNFVNCVRFAPDGSKFITVSSDKKGIIY---DG 216
Query: 232 KHLHTLDQMIS 264
K L ++ S
Sbjct: 217 KTCEILGELSS 227
Score = 36.7 bits (81), Expect = 0.017
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKI-NHLGHSGYLNTVTVSPDGSLCAS 186
+S +R+SP+ + + S +R VW + ++K+ N L HS +N + SP+ ++ A+
Sbjct: 494 ISVIRYSPDLS--MFASADLNREAVVWDRVSREMKLKNMLYHSARINCLAWSPNSTMVAT 551
Query: 187 GGKDMKAMLWDLN 225
G D ++++++
Sbjct: 552 GSLDTCVIVYEVD 564
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 130 HSGYLNTVTVSPDGSLCASGGKDMKAMLWD 219
H G ++ + SPD S+ AS + +A++WD
Sbjct: 490 HRGAISVIRYSPDLSMFASADLNREAVVWD 519
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/71 (33%), Positives = 36/71 (50%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
++ V FS A I + G D VKVW L + + GH + +++SPDGS +
Sbjct: 183 ITAVSFSD--AADKIFTGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTN 240
Query: 190 GKDMKAMLWDL 222
G D K +WD+
Sbjct: 241 GMDNKLCVWDM 251
Score = 38.3 bits (85), Expect = 0.006
Identities = 25/102 (24%), Positives = 43/102 (42%)
Frame = +1
Query: 46 PIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLN 225
P+I+S D T K+W + + I + V+ S +GG D +WDL
Sbjct: 152 PLIISGSDDGTAKLWDMRQ-RGAIQTFPDKYQITAVSFSDAADKIFTGGVDNDVKVWDLR 210
Query: 226 DGKHLHTLDQMISSRPCASHPTDTGYVLLSDLPSRSGIWKAR 351
G+ TL+ + S D Y+L + + ++ +W R
Sbjct: 211 KGEATMTLEGHQDTITGMSLSPDGSYLLTNGMDNKLCVWDMR 252
Score = 35.9 bits (79), Expect = 0.029
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLT-NCKLKINHLGHSGYLNTVTVSPDGSLCAS 186
V ++F+P A +I S DR + +W + +CK + GH + + + DGS S
Sbjct: 56 VYTMKFNP--AGTLIASGSHDREIFLWRVHGDCKNFMVLKGHKNAILDLHWTSDGSQIVS 113
Query: 187 GGKDMKAMLWDLNDGKHL 240
D WD+ GK +
Sbjct: 114 ASPDKTVRAWDVETGKQI 131
Score = 34.7 bits (76), Expect = 0.068
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDG-SLCASGGKDMKAMLWDLND 228
IVS D+TV+ W + K HS ++N+ + G L SG D A LWD+
Sbjct: 111 IVSASPDKTVRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLWDMRQ 170
Query: 229 GKHLHT 246
+ T
Sbjct: 171 RGAIQT 176
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 160 SPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMISS-RPCASHPTD 294
SPDG+ +G D +WD + ++ L S C HPT+
Sbjct: 281 SPDGTKVTAGSSDRMVHIWDTTSRRTIYKLPGHTGSVNECVFHPTE 326
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Frame = +1
Query: 127 GHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLN-DGKHLHTLDQMISSRPCASHPTDTGY 303
GH + T+ +P G+L ASG D + LW ++ D K+ L + + H T G
Sbjct: 51 GHPSAVYTMKFNPAGTLIASGSHDREIFLWRVHGDCKNFMVL-KGHKNAILDLHWTSDGS 109
Query: 304 VLLSDLPSRSGIWKARRWLKSSG--LKSLTKH 393
++S P ++ R W +G +K + +H
Sbjct: 110 QIVSASPDKT----VRAWDVETGKQIKKMAEH 137
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +1
Query: 4 DWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCA 183
D++ V+F +H NP IVS D+T+++W+ + GH+ Y+ + P L
Sbjct: 94 DYIRTVQF--HHENPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVV 151
Query: 184 SGGKDMKAMLWDL 222
S D +WD+
Sbjct: 152 SASLDQTVRVWDI 164
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/103 (23%), Positives = 39/103 (37%)
Frame = +1
Query: 34 NHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAML 213
+++ P+ VS G D +KVW+ + LGH Y+ TV + S D +
Sbjct: 60 HNSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRI 119
Query: 214 WDLNDGKHLHTLDQMISSRPCASHPTDTGYVLLSDLPSRSGIW 342
W+ + L CAS V+ + L +W
Sbjct: 120 WNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 46 PIIVSCGWDRTVKVWHLTNCKL-KINHL-GHSGYLNTVTVSPDGSLCASGGKDMKAMLWD 219
P+IVS DR VK+W + K +++ L GH +++V + S +D +WD
Sbjct: 217 PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWD 276
Score = 27.9 bits (59), Expect(2) = 0.026
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 7 WVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLK 114
+V C F P ++VS D+TV+VW + K K
Sbjct: 137 YVMCASFHPKE--DLVVSASLDQTVRVWDIGALKKK 170
Score = 27.1 bits (57), Expect(2) = 0.026
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 127 GHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGK 234
GH +N + P L SG D + LW +N+ K
Sbjct: 202 GHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNETK 237
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +1
Query: 43 NPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDL 222
N + + D+TVK+W+L KL+ GH ++ S DG + D A LW +
Sbjct: 229 NKYLATASSDKTVKIWNLDGFKLEKVLTGHERWVWDCDFSMDGEYLVTASSDTTARLWSM 288
Query: 223 NDGK 234
GK
Sbjct: 289 RAGK 292
>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
repeats
Length = 367
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDG 231
+ + D W + + K+K+ GHS YL+TV S +G +D A +WD G
Sbjct: 174 VFTAAGDSCAYCWDVESGKIKMTFKGHSDYLHTVVSRSSASQILTGSEDGTARIWDCKTG 233
Query: 232 K 234
K
Sbjct: 234 K 234
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +1
Query: 49 IIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSP-DGSLCASGGKDMKAMLWDLN 225
+++S D+TV++W T C ++ H+ Y+ V +P + + ASG D KA +W L+
Sbjct: 285 LLLSASKDKTVRLWR-TGCDQCLHVFHHNNYVTCVEFNPVNKNNFASGSIDGKARIWGLS 343
Query: 226 DGKHLHTLDQMISSRPCASHPTDTGYVL 309
+ + + D S + P G+V+
Sbjct: 344 EERVVAWTDVRDSISAISYQPNGNGFVV 371
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 112 KINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLW 216
KIN GH G + T+ SPDG A+GG+D +W
Sbjct: 193 KIN--GHKGKIWTLKFSPDGKYLATGGEDGVVKIW 225
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 41.5 bits (93), Expect = 6e-04
Identities = 25/77 (32%), Positives = 41/77 (53%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLC 180
+D V V SP+ A I V+ D TVKV+++ + K ++ GH + + +S DG L
Sbjct: 540 NDDVLAVAISPD-AKHIAVAL-LDSTVKVFYMDSLKFYLSLYGHKLPVMCIDISSDGELI 597
Query: 181 ASGGKDMKAMLWDLNDG 231
+G +D +W L+ G
Sbjct: 598 VTGSQDKNLKIWGLDFG 614
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 52 IVSCGW-DRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDL 222
+V+ G+ D ++++W ++N H G + + + GS+ ASG KD +LWD+
Sbjct: 78 LVAVGYADGSIRIWDTEKGTCEVNFNSHKGAVTALRYNKVGSMLASGSKDNDIILWDV 135
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/75 (26%), Positives = 30/75 (40%)
Frame = +1
Query: 4 DWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCA 183
D V V+F N + S G DR VK W + + GH + + +S G
Sbjct: 625 DSVMGVKFVRN--THYLFSIGKDRLVKYWDADKFEHLLTLEGHHAEIWCLAISNRGDFLV 682
Query: 184 SGGKDMKAMLWDLND 228
+G D WD ++
Sbjct: 683 TGSHDRSMRRWDRSE 697
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 115 INHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLD 252
I H GH + +VT+S D +L S + +W+ + G L T+D
Sbjct: 400 IEHQGHRSDVRSVTLSEDNTLLMSTSHS-EVKIWNPSTGSCLRTID 444
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/81 (25%), Positives = 34/81 (41%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
V C+ S + +IV+ D+ +K+W L + H + V + S
Sbjct: 585 VMCIDISSD--GELIVTGSQDKNLKIWGLDFGDCHKSIFAHGDSVMGVKFVRNTHYLFSI 642
Query: 190 GKDMKAMLWDLNDGKHLHTLD 252
GKD WD + +HL TL+
Sbjct: 643 GKDRLVKYWDADKFEHLLTLE 663
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 41.5 bits (93), Expect = 6e-04
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 19 VRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHL-GHSGYLNTVTVSPDGSLCASGGK 195
VRF P ++ + TV ++ + N ++N GHS +++V SP+G L AS +
Sbjct: 638 VRFQPRTGQ--FLAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSE 695
Query: 196 DMKAMLWDLNDGKHLHTL 249
D LW L+ G +H L
Sbjct: 696 D-AVKLWSLSSGDCIHEL 712
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 264 ITALCFSPNRYWLCAAFGPSIKIWDLESKEMVEEL 368
+ ++C+SPN + + ++K+W L S + + EL
Sbjct: 678 VHSVCWSPNGELVASVSEDAVKLWSLSSGDCIHEL 712
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 41.5 bits (93), Expect = 6e-04
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 19 VRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHL-GHSGYLNTVTVSPDGSLCASGGK 195
VRF P ++ + TV ++ + N ++N GHS +++V SP+G L AS +
Sbjct: 640 VRFQPRTGQ--FLAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSE 697
Query: 196 DMKAMLWDLNDGKHLHTL 249
D LW L+ G +H L
Sbjct: 698 D-AVKLWSLSSGDCIHEL 714
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 264 ITALCFSPNRYWLCAAFGPSIKIWDLESKEMVEEL 368
+ ++C+SPN + + ++K+W L S + + EL
Sbjct: 680 VHSVCWSPNGELVASVSEDAVKLWSLSSGDCIHEL 714
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 41.5 bits (93), Expect = 6e-04
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 19 VRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHL-GHSGYLNTVTVSPDGSLCASGGK 195
VRF P ++ + TV ++ + N ++N GHS +++V SP+G L AS +
Sbjct: 640 VRFQPRTGQ--FLAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSE 697
Query: 196 DMKAMLWDLNDGKHLHTL 249
D LW L+ G +H L
Sbjct: 698 D-AVKLWSLSSGDCIHEL 714
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 264 ITALCFSPNRYWLCAAFGPSIKIWDLESKEMVEEL 368
+ ++C+SPN + + ++K+W L S + + EL
Sbjct: 680 VHSVCWSPNGELVASVSEDAVKLWSLSSGDCIHEL 714
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 41.5 bits (93), Expect = 6e-04
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 19 VRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHL-GHSGYLNTVTVSPDGSLCASGGK 195
VRF P ++ + TV ++ + N ++N GHS +++V SP+G L AS +
Sbjct: 640 VRFQPRTGQ--FLAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSE 697
Query: 196 DMKAMLWDLNDGKHLHTL 249
D LW L+ G +H L
Sbjct: 698 D-AVKLWSLSSGDCIHEL 714
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 264 ITALCFSPNRYWLCAAFGPSIKIWDLESKEMVEEL 368
+ ++C+SPN + + ++K+W L S + + EL
Sbjct: 680 VHSVCWSPNGELVASVSEDAVKLWSLSSGDCIHEL 714
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 41.5 bits (93), Expect = 6e-04
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 19 VRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHL-GHSGYLNTVTVSPDGSLCASGGK 195
VRF P ++ + TV ++ + N ++N GHS +++V SP+G L AS +
Sbjct: 640 VRFQPRTGQ--FLAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSE 697
Query: 196 DMKAMLWDLNDGKHLHTL 249
D LW L+ G +H L
Sbjct: 698 D-AVKLWSLSSGDCIHEL 714
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 264 ITALCFSPNRYWLCAAFGPSIKIWDLESKEMVEEL 368
+ ++C+SPN + + ++K+W L S + + EL
Sbjct: 680 VHSVCWSPNGELVASVSEDAVKLWSLSSGDCIHEL 714
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 41.1 bits (92), Expect = 8e-04
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Frame = +1
Query: 70 DRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTL 249
DR VK+W + + GH G + + VS + +L AS D +W L DG + L
Sbjct: 326 DRLVKIWSMETALCLASCRGHEGDITDLAVSSNNALVASASNDFVIRVWRLPDGMPISVL 385
Query: 250 DQMISS-RPCASHPTDTG-YVLLSDLPSRS-GIWKAR--RWL 360
+ A P Y LLS + IW AR +WL
Sbjct: 386 RGHTGAVTAIAFSPRQASVYQLLSSSDDGTCRIWDARYSQWL 427
>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 471
Score = 41.1 bits (92), Expect = 8e-04
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Frame = +1
Query: 4 DWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCA 183
D VSC+ S N ++ S WD+T+KVW L++ K + H +NTV VS L
Sbjct: 246 DAVSCL--SLNEDLGLLYSGSWDKTLKVWRLSDSKCLESIEAHDDAVNTV-VSGFDDLVF 302
Query: 184 SGGKDMKAMLWDLN-DGKHL-HTLDQMI 261
+G D +W GK + H L Q++
Sbjct: 303 TGSADGTLKVWKREVQGKEMKHVLVQVL 330
Score = 31.1 bits (67), Expect = 0.84
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +1
Query: 52 IVSCGW-DRTVKVWHLTNCKLKINHLG--HSGYLNTVTVSPDGSLCASGGKDMKAMLWDL 222
+V CG D TV W + H G H + + ++ GSL SGG D +W
Sbjct: 348 VVYCGSSDGTVNFWERQKY---LTHKGTIHGHRMAVLCLATAGSLLLSGGADKNICVWKR 404
Query: 223 N-DGKH 237
N DG H
Sbjct: 405 NGDGSH 410
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +1
Query: 43 NPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWD 219
N SCG DR V W ++ ++ GH G +N V + S+ S G D +WD
Sbjct: 72 NAKFCSCGGDRQVYYWDVSTGRVIRKFRGHDGEVNAVKFNDSSSVVVSAGFDRSLRVWD 130
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +1
Query: 55 VSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGK 234
++CG DRT+++W+ L + H + V V+ D + S G D + WD++ G+
Sbjct: 34 LTCGKDRTIRLWNPHRGILIKTYKSHGREVRDVHVTSDNAKFCSCGGDRQVYYWDVSTGR 93
Score = 29.5 bits (63), Expect = 2.6
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTV-TVSPDGSLCAS 186
V+ V+F N ++ ++VS G+DR+++VW + ++ + + +L+TV +V +
Sbjct: 105 VNAVKF--NDSSSVVVSAGFDRSLRVWDCRSHSVEPVQIIDT-FLDTVMSVVLTKTEIIG 161
Query: 187 GGKDMKAMLWDLNDGKHLHTLDQMISSRPCASHPTDTGYVLLSDLPS 327
G D +D+ G+ + D + C S D VL L S
Sbjct: 162 GSVDGTVRTFDMRIGREMS--DNLGQPVNCISISNDGNCVLAGCLDS 206
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/77 (33%), Positives = 37/77 (48%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
V +FS H +VS +DRT+K+W L + N + + N + +S DG SG
Sbjct: 321 VDVSKFSSRH----VVSAAYDRTIKLWDL-HKGYCTNTVLFTSNCNAICLSIDGLTVFSG 375
Query: 190 GKDMKAMLWDLNDGKHL 240
D LWD+ GK L
Sbjct: 376 HMDGNLRLWDIQTGKLL 392
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 64 GWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLH 243
G DR VK+W + L + G G + + V+ D + +WD++ G+ H
Sbjct: 250 GQDRAVKMWDTNSGTLIKSLYGSLGNILDMAVTHDNKSVIAATSSNNLFVWDVSSGRVRH 309
Query: 244 TL 249
TL
Sbjct: 310 TL 311
Score = 30.3 bits (65), Expect = 1.5
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Frame = +1
Query: 70 DRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTL 249
D +++W + KL GHS + +V++S +G+ + G+D ++D + TL
Sbjct: 378 DGNLRLWDIQTGKLLSEVAGHSSAVTSVSLSRNGNRILTSGRDNVHNVFDTRTLEICGTL 437
Query: 250 ----DQMIS--SRPCASHPTDTGYVLLSDLPSRSGIWKARRWLKSSGLKSLT 387
+++ S SR C S D YV +W + S LK T
Sbjct: 438 RASGNRLASNWSRSCIS--PDDDYVAAGSADGSVHVWSLSKGNIVSILKEQT 487
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 37 HANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSL-CASGGKDMKAML 213
H N +++ + VW +++ +++ GH+ + V VS S S D L
Sbjct: 283 HDNKSVIAATSSNNLFVWDVSSGRVRHTLTGHTDKVCAVDVSKFSSRHVVSAAYDRTIKL 342
Query: 214 WDLNDGKHLHTL 249
WDL+ G +T+
Sbjct: 343 WDLHKGYCTNTV 354
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 157 VSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMISSRPCAS 282
+SPD A+G D +W L+ G + L + S C S
Sbjct: 453 ISPDDDYVAAGSADGSVHVWSLSKGNIVSILKEQTSPILCCS 494
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = +1
Query: 64 GWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLH 243
G D V+ + C +I+ H G ++ + +GG+D +WD N G +
Sbjct: 210 GTDHFVESTIPSTCANRIH--AHEGGCGSIVFEYNSGTLFTGGQDRAVKMWDTNSGTLIK 267
Query: 244 TL 249
+L
Sbjct: 268 SL 269
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/103 (24%), Positives = 40/103 (38%)
Frame = +1
Query: 34 NHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAML 213
+++ P+ VS G D +KVW+ N + LGH Y+ TV + S D +
Sbjct: 60 HNSQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRI 119
Query: 214 WDLNDGKHLHTLDQMISSRPCASHPTDTGYVLLSDLPSRSGIW 342
W+ + L CAS V+ + L +W
Sbjct: 120 WNWQSRTCVSVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +1
Query: 4 DWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCA 183
D++ V+F +H P IVS D+T+++W+ + GH+ Y+ + P L
Sbjct: 94 DYIRTVQF--HHEYPWIVSASDDQTIRIWNWQSRTCVSVLTGHNHYVMCASFHPKEDLVV 151
Query: 184 SGGKDMKAMLWDL 222
S D +WD+
Sbjct: 152 SASLDQTVRVWDI 164
Score = 34.3 bits (75), Expect = 0.090
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +1
Query: 46 PIIVSCGWDRTVKVWHLTNCKL-KINHL-GHSGYLNTVTVSPDGSLCASGGKDMKAMLWD 219
P+IVS DR VK+W + K +++ L GH +++V + S +D +WD
Sbjct: 217 PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWD 276
Query: 220 LNDGKHLHT 246
L T
Sbjct: 277 ATKRTGLQT 285
>At3g51930.1 68416.m05696 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
myosin heavy chain kinase B (SP:P90648)(GI:1903458)
[Dictyostelium discoideum]
Length = 415
Score = 40.3 bits (90), Expect = 0.001
Identities = 28/89 (31%), Positives = 43/89 (48%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLC 180
+D +SC+ HA II S WD+T+KVW L++ K + H +N + V+ DG +
Sbjct: 174 ADSISCLAV---HAG-IIYSGSWDKTLKVWRLSDLKCLESIKAHDDAINGL-VAGDGRV- 227
Query: 181 ASGGKDMKAMLWDLNDGKHLHTLDQMISS 267
S D K +W K + + SS
Sbjct: 228 YSASADGKVKIWGKEKRKQIESTSSSSSS 256
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/71 (33%), Positives = 35/71 (49%)
Frame = +1
Query: 4 DWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCA 183
D VSC+ S N ++ S WD+T+KVW L++ K + H +NTV D L
Sbjct: 250 DAVSCL--SLNEELGLLYSGSWDKTLKVWRLSDSKCLESIQAHDDAINTVAAGFD-DLLF 306
Query: 184 SGGKDMKAMLW 216
+G D +W
Sbjct: 307 TGSADGTLKVW 317
Score = 28.3 bits (60), Expect = 5.9
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Frame = +1
Query: 52 IVSCGW-DRTVKVWHLTNCKLKINHL-GHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLN 225
+V CG D TV W L GH L + ++ GSL SGG D +W N
Sbjct: 352 VVYCGSSDGTVNFWEGQKYLSHGGTLRGHR--LAVLCLAAAGSLVLSGGADKNICVWRRN 409
Query: 226 -DGKH--LHTLDQMISSRPCASHPTDTG 300
DG H L L + C + D G
Sbjct: 410 GDGSHSCLSVLMDHVGPVKCLTAVEDDG 437
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
family protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 388
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 49 IIVSCGWDRTVKVWHLTNCK-LKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLN 225
++ S WDRT+K+W T+ K L+ H +N V +S +G + +G D + +W N
Sbjct: 179 LLYSVSWDRTLKIWRTTDFKCLESFTNAHDDAINAVALSENGDI-YTGSSDQRIKVWRKN 237
Score = 31.5 bits (68), Expect = 0.63
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Frame = +1
Query: 70 DRTVKVWHLT----NCKLKINHL------GHSGYLNTVTVS-PDGSLCASGGKDMKAMLW 216
D+ +KVW N K K H H+ +N + +S +GSL SGG D ++W
Sbjct: 228 DQRIKVWRKNINEENVKKKRKHSLVAILSEHNSGINALALSGTNGSLLHSGGSDGSILVW 287
Query: 217 DLNDG 231
+ +DG
Sbjct: 288 ERDDG 292
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/96 (21%), Positives = 37/96 (38%)
Frame = +1
Query: 112 KINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMISSRPCASHPT 291
K + + H ++ + +S DG+L S D +W D K L + A +
Sbjct: 158 KASWVHHVDAVSGLALSRDGTLLYSVSWDRTLKIWRTTDFKCLESFTNAHDDAINAVALS 217
Query: 292 DTGYVLLSDLPSRSGIWKARRWLKSSGLKSLTKHKL 399
+ G + R +W R+ + +K KH L
Sbjct: 218 ENGDIYTGSSDQRIKVW--RKNINEENVKKKRKHSL 251
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1
Query: 43 NPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDL 222
N +I+S DRT KVW L+ KL + ++ +N + + P G + +G +D K + +
Sbjct: 187 NAVIISSSEDRTCKVWSLSRGKL-LKNIIFPSVINALALDPGGCVFYAGARDSKIYIGAI 245
Query: 223 N 225
N
Sbjct: 246 N 246
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = +1
Query: 34 NHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAML 213
N+ +V G + +W + KL GH + + S D SL SG +D +
Sbjct: 87 NNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYRSVTCLVFSGDDSLLVSGSQDGSIRV 146
Query: 214 WDL 222
W L
Sbjct: 147 WSL 149
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 166 DGSLCASGGKDMKAMLWDLNDGKHLHTLDQMISSR 270
DG+L SG +D +WD +H+ TL SR
Sbjct: 274 DGNLLISGSEDGVVCVWDPKSLRHVRTLIHAKGSR 308
>At3g10530.1 68416.m01264 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400); BING4
(gi:3811380) {Mus musculus]; similar to hypothetical
protein GB:P40055 [Saccharomyces cerevisiae]
Length = 536
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +1
Query: 76 TVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTL 249
TV +W T+ + H G +++V P+G L A+ GK+ K +WDL + + T+
Sbjct: 262 TVTMWKPTSQAPLVQMQCHPGPVSSVAFHPNGHLMATSGKERKIKIWDLRKFEEVQTI 319
>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
repeat (6 copies,1 weak)
Length = 757
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 127 GHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLD 252
GH G +N + + +GSL SG D++ +W+ + K LH++D
Sbjct: 48 GHQGCVNALAWNSNGSLLISGSDDLRINIWNYSSRKLLHSID 89
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDG 231
I +CG D V + K +H HS ++N + SPDG+ + D K M++D G
Sbjct: 24 IATCGEDFLVNFYDGPPFKFHSSHREHSNFVNCIRYSPDGTKFITVSSDKKGMIYDGKTG 83
Query: 232 KHLHTL---DQMISSRPCASHPTDTGYVLLSDLPSRSGIWK 345
+ L D S S D+ VL + +W+
Sbjct: 84 DKVGELASEDGHKGSIYAVSWSPDSKRVLTVSADKSAKVWE 124
Score = 32.7 bits (71), Expect = 0.27
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWH-LTNCKLK--INHLGHSGYLNTVTVSPDG 171
S++V+C+R+SP+ I VS D+ ++ T K+ + GH G + V+ SPD
Sbjct: 51 SNFVNCIRYSPDGTKFITVSS--DKKGMIYDGKTGDKVGELASEDGHKGSIYAVSWSPDS 108
Query: 172 SLCASGGKDMKAMLWDL-NDG 231
+ D A +W++ DG
Sbjct: 109 KRVLTVSADKSAKVWEVAEDG 129
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 130 HSGYLNTVTVSPDGSLCASGGKDMKAMLWD 219
H G L + SPD ++ ASG + +A++WD
Sbjct: 355 HRGALTVIRYSPDLTMFASGDANREAVVWD 384
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGS-LCASGGKDMKAMLWDLND 228
+++ D+T+KVW + K +GH+G + ++ P S L SG +D LWDL
Sbjct: 143 LLTASGDQTIKVWDVEENKCTGVLIGHTGTVKSMCSHPTNSDLLVSGSRDGCFALWDLRC 202
Query: 229 GKHLHTLDQMISS 267
H + I+S
Sbjct: 203 KSSSHKEEFCINS 215
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 157 VSPDGSLCASGGKDMKAMLWDLN 225
+SPDG SG D A +W +N
Sbjct: 346 ISPDGEYVLSGSSDGNAYIWQVN 368
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSP-DGSLCASGGKDMKAMLWDLND 228
++S D+TV++W L++ K + HS Y+ + +P D + SG D K +W + D
Sbjct: 482 LLSSSMDKTVRLWDLSS-KTCLKVFSHSDYVTCIQFNPVDDNYFISGSLDAKVRIWSIPD 540
Score = 31.1 bits (67), Expect = 0.84
Identities = 20/95 (21%), Positives = 43/95 (45%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLC 180
SD+V+C++F+P N +S D V++W + + ++ ++ + +PDG
Sbjct: 508 SDYVTCIQFNPVDDN-YFISGSLDAKVRIWSIPDHQV-VDWNDLHEMVTAACYTPDGQGA 565
Query: 181 ASGGKDMKAMLWDLNDGKHLHTLDQMISSRPCASH 285
G L++ +D K + + +R +H
Sbjct: 566 LVGSYKGTCCLYNTHDNKLQQRREINLKNRKKKTH 600
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 37.9 bits (84), Expect = 0.007
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 19/83 (22%)
Frame = +1
Query: 58 SCGWDRTVKVWHLTNCK-------------LKIN------HLGHSGYLNTVTVSPDGSLC 180
SC D TVKVW T C ++I + GH + +V P SL
Sbjct: 224 SCSDDTTVKVWDFTKCVDESSLTGYIGKGVIEIRFGVMPCNAGHGWDVKSVDWHPTKSLL 283
Query: 181 ASGGKDMKAMLWDLNDGKHLHTL 249
SGGKD LWD G+ L +L
Sbjct: 284 VSGGKDQLVKLWDTRSGRELCSL 306
Score = 31.5 bits (68), Expect = 0.63
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +1
Query: 49 IIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLND 228
++VS G D+ VK+W + + + GH + +V + +G+ + KD L+D+
Sbjct: 282 LLVSGGKDQLVKLWDTRSGRELCSLHGHKNIVLSVKWNQNGNWLLTASKDQIIKLYDIRT 341
Query: 229 GKHLHT 246
K L +
Sbjct: 342 MKELQS 347
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 37.1 bits (82), Expect = 0.013
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Frame = +1
Query: 70 DRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTL 249
DR VKVW + + GH G + + VS + AS D +W L DG + L
Sbjct: 266 DRLVKVWSMDTAYCLASCRGHEGDITDLAVSSNNIFIASASNDCVIRVWRLPDGLPVSVL 325
Query: 250 ---DQMISSRPCASHPTDTGYVLLSDLPSRSGIWKAR 351
+++ + P +L S IW AR
Sbjct: 326 RGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRIWDAR 362
>At3g50390.1 68416.m05512 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to myosin heavy chain kinase B (gb:U90946)
[Dictyostelium discoideum]
Length = 469
Score = 37.1 bits (82), Expect = 0.013
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Frame = +1
Query: 4 DWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCA 183
D +SC+ S + ++ S WD+T KVW +++ + + H +N V DG L
Sbjct: 212 DAISCLALSEDKR--LLYSGSWDKTFKVWRVSDLRCVESVNAHEDAVNAVVSGFDG-LVF 268
Query: 184 SGGKDMKAMLWDLNDGKH--LHTLDQMISSRPCA 279
+G D +W D H + + + CA
Sbjct: 269 TGSADGTVKVWRREDQAKDTKHFFSETLLKQDCA 302
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSP-DGSLCASGGKDMKAMLWDLND 228
++S D+TV++W+L++ + + HS Y+ + +P D SG D K +W + D
Sbjct: 527 LLSSSMDKTVRLWNLSS-QTCLKVFSHSDYVTCIQFNPVDDRYFISGSLDAKVRVWSIPD 585
Query: 229 GKHL--HTLDQMISS 267
+ + + L +M++S
Sbjct: 586 RQVVDWYDLHEMVTS 600
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLC 180
SD+V+C++F+P + +S D V+VW + + ++ ++ + + +PDG
Sbjct: 553 SDYVTCIQFNPVD-DRYFISGSLDAKVRVWSIPDRQV-VDWYDLHEMVTSACYTPDGQGV 610
Query: 181 ASGGKDMKAMLWDLNDGK 234
G ++ +D K
Sbjct: 611 LVGSYKGSCRMYSASDNK 628
Score = 27.9 bits (59), Expect = 7.8
Identities = 8/38 (21%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +3
Query: 255 NDIITALCFSP--NRYWLCAAFGPSIKIWDLESKEMVE 362
+D +T + F+P +RY++ + +++W + +++V+
Sbjct: 553 SDYVTCIQFNPVDDRYFISGSLDAKVRVWSIPDRQVVD 590
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLC 180
S V+ + FS + + ++S +D+T ++ L + KL GH+ Y+N + DGS
Sbjct: 305 SQGVTSLSFSRDGSQ--LLSTSFDQTARIHGLKSGKLLKEFRGHTSYVNHAIFTSDGSRI 362
Query: 181 ASGGKDMKAMLWD 219
+ D +WD
Sbjct: 363 ITASSDCTVKVWD 375
Score = 33.5 bits (73), Expect = 0.16
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Frame = +1
Query: 16 CVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKIN--------HLGHSGYLNTVTVSPDG 171
C RFSP+ + S D ++VW + KLK + + H + + S D
Sbjct: 218 CARFSPD--GQFLASSSVDGFIEVWDYISGKLKKDLQYQADESFMMHDDPVLCIDFSRDS 275
Query: 172 SLCASGGKDMKAMLWDLNDGKHLHTLD 252
+ ASG +D K +W + G + D
Sbjct: 276 EMLASGSQDGKIKIWRIRTGVCIRRFD 302
Score = 31.1 bits (67), Expect = 0.84
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +1
Query: 4 DWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCA 183
D V C+ FS + + ++ S D +K+W + HS + +++ S DGS
Sbjct: 264 DPVLCIDFSRD--SEMLASGSQDGKIKIWRIRTGVCIRRFDAHSQGVTSLSFSRDGSQLL 321
Query: 184 SGGKDMKAMLWDLNDGKHL 240
S D A + L GK L
Sbjct: 322 STSFDQTARIHGLKSGKLL 340
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 37.1 bits (82), Expect = 0.013
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSP-DGSLCASGGKDMKAMLWDLND 228
+ S ++ V+VW + +L H + ++ S D +L ASG D LW +N
Sbjct: 549 VASSNFEGVVQVWDVARNQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 608
Query: 229 GKHLHTLDQMISSRPCASHPTDTG 300
G + T+ + ++ C P++TG
Sbjct: 609 GVSIGTI-KTKANICCVQFPSETG 631
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 37.1 bits (82), Expect = 0.013
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSP-DGSLCASGGKDMKAMLWDLND 228
+ S ++ V+VW + +L H + ++ S D +L ASG D LW +N
Sbjct: 549 VASSNFEGVVQVWDVARNQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 608
Query: 229 GKHLHTLDQMISSRPCASHPTDTG 300
G + T+ + ++ C P++TG
Sbjct: 609 GVSIGTI-KTKANICCVQFPSETG 631
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 36.7 bits (81), Expect = 0.017
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +1
Query: 25 FSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHL-GHSGYLNTVTVSPDGSLCASGGKDM 201
FSP +P ++ G D H K + + GH+ ++ +V SPDG A+G D
Sbjct: 208 FSP--VDPRVLFSGSDDGHVNMHDAEGKTLLGSMSGHTSWVLSVDASPDGGAIATGSSDR 265
Query: 202 KAMLWDLNDGKHLHTL 249
LWDL + T+
Sbjct: 266 TVRLWDLKMRAAIQTM 281
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/68 (23%), Positives = 31/68 (45%)
Frame = +1
Query: 49 IIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLND 228
++++ D TVK+W L + GHS + + P G + AS D ++D++
Sbjct: 32 LLLTGSLDETVKLWRPDELDLVRTNTGHSLGVAALAAHPSGIIAASSSIDSFVRVFDVDT 91
Query: 229 GKHLHTLD 252
+ L+
Sbjct: 92 NATIAVLE 99
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 36.7 bits (81), Expect = 0.017
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Frame = +1
Query: 4 DWVSCVRFSPNHANPIIVSCGWDRTVKVW----HLTNCKLKINHLGHSGYLNTVTVSPDG 171
D+V C SP + + ++V+ +D TVKVW H +N +IN H + V P G
Sbjct: 179 DYVRCGDCSPVN-DSMLVTGSYDHTVKVWDARVHTSNWIAEIN---HGLPVEDVVYLPSG 234
Query: 172 SLCA-SGGKDMKAMLWDLNDG 231
L A +GG +K +WDL G
Sbjct: 235 GLIATAGGNSVK--VWDLIGG 253
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSP-DGSLCASGGKDMKAMLWD 219
+VS G D VK W + + + LGH Y+ SP + S+ +G D +WD
Sbjct: 151 LVSGGDDGVVKYWDVAGATVISDLLGHKDYVRCGDCSPVNDSMLVTGSYDHTVKVWD 207
>At5g23730.1 68418.m02782 transducin family protein / WD-40 repeat
family protein contains similarity to photomorphogenesis
repressor protein; contains Pfam PF00400: WD domain,
G-beta repeat (5 copies)
Length = 243
Score = 36.3 bits (80), Expect = 0.022
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSP--DGSLCA 183
V CV F P+ + V C DR V+ + KL L G+ TV+ DG
Sbjct: 72 VCCVEFDPSGGPAVAVGCA-DRKGYVYDIR--KLVDPALTLQGHTKTVSYVRFLDGGTVV 128
Query: 184 SGGKDMKAMLWDLNDGKHLHTLDQMISSR 270
+ G D LW + DG+ + T + +++R
Sbjct: 129 TAGTDGCLKLWSVEDGRVIRTYEGHVNNR 157
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVS--PDGSLCA 183
VS VRF +V+ G D +K+W + + ++ + GH N V +S +G+L
Sbjct: 116 VSYVRFLDGGT---VVTAGTDGCLKLWSVEDGRVIRTYEGHVNNRNFVGLSVWRNGALFG 172
Query: 184 SGGKDMKAMLWDLNDGK 234
G ++ + ++D GK
Sbjct: 173 CGSENNRVFVYDRRWGK 189
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 36.3 bits (80), Expect = 0.022
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGH-SGYLNTVTVSPDGSLCAS 186
VSCV+ +++ D TVK+W + + + +G S + ++ + A+
Sbjct: 942 VSCVKMLSGER---VLTAAHDGTVKMWDVRT-DMCVATVGRCSSAILSLEYDDSTGILAA 997
Query: 187 GGKDMKAMLWDLNDGKHLHTL 249
G+D A +WD+ GK +H L
Sbjct: 998 AGRDTVANIWDIRSGKQMHKL 1018
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/61 (21%), Positives = 29/61 (47%)
Frame = +1
Query: 49 IIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLND 228
I+ + G D +W + + K GH+ ++ ++ + D + +G D A +W ++
Sbjct: 994 ILAAAGRDTVANIWDIRSGKQMHKLKGHTKWIRSIRMVEDTLI--TGSDDWTARVWSVSR 1051
Query: 229 G 231
G
Sbjct: 1052 G 1052
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 36.3 bits (80), Expect = 0.022
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 49 IIVSCGWDRTVKVWHLTNCKLKINHLGHSGY-LNTVTVSPD-GSLCASGGKDMKAMLWD 219
I+ + D+TVKVW + + ++ + L GY + V SP SL AS DM LWD
Sbjct: 207 ILATSSVDKTVKVWDVRSYRVPLAVLNGHGYAVRKVKFSPHRRSLIASCSYDMSVCLWD 265
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSP-DGSLCAS 186
V V ++P + + S WD TVK+W + H+ + +P G + AS
Sbjct: 109 VQSVDYNPTRRDSFLTS-SWDDTVKLWAMDRPASVRTFKEHAYCVYQAVWNPKHGDVFAS 167
Query: 187 GGKDMKAMLWDLND 228
D +WD+ +
Sbjct: 168 ASGDCTLRIWDVRE 181
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 35.9 bits (79), Expect = 0.029
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDG-SLCASGGKDMKAMLWDLN 225
I S D V +WH + KL + GH+G +N V+ SP + AS D +W L+
Sbjct: 504 IASGSEDSQVYIWHRSTGKLIVELPGHAGAVNCVSWSPTNLHMLASASDDGTIRIWGLD 562
Score = 34.7 bits (76), Expect = 0.068
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLT---NCKLKINHLGHSGYLNTVTVSPDG 171
+D V ++FS H + S D+T +W ++ + LK +GH + + SPD
Sbjct: 274 TDEVWFLQFS--HNGKYLASSSKDQTAIIWEISADGHISLKHTLVGHHKPVIAILWSPDD 331
Query: 172 SLCASGGKDMKAMLWDLNDGKHLHTLDQ-MISSRPCASHPTDTGYV 306
+ G + WD++ G +H ++ IS C +P G +
Sbjct: 332 RQVLTCGAEEVIRRWDVDSGDCVHMYEKGGISPISCGWYPDGQGII 377
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVS--PDGSLCA 183
V + +SP+ +++CG + ++ W + + H+ G ++ ++ PDG
Sbjct: 322 VIAILWSPDDRQ--VLTCGAEEVIRRWDVDSGDCV--HMYEKGGISPISCGWYPDGQGII 377
Query: 184 SGGKDMKAMLWDLNDGKHLHTLDQMISSRPCASHPTDTGYVLLS 315
+G D +WDL DG+ + + TD G L+S
Sbjct: 378 AGMTDRSICMWDL-DGREKECWKGQRTQKVSDIAMTDDGKWLVS 420
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 35.9 bits (79), Expect = 0.029
Identities = 24/78 (30%), Positives = 38/78 (48%)
Frame = +1
Query: 172 SLCASGGKDMKAMLWDLNDGKHLHTLDQMISSRPCASHPTDTGYVLLSDLPSRSGIWKAR 351
++ ASG +D K +WD+ GK T++ + T VLLS R+ + K
Sbjct: 228 NIVASGSEDKKVKVWDVATGKCKVTMEHHEKKVHAVAWNNYTPEVLLSGSRDRTVVLKDG 287
Query: 352 RWLKSSGLKSLTKHKLPR 405
R +SGLK T+ K+ +
Sbjct: 288 RDPSNSGLKWSTEAKVEK 305
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 35.9 bits (79), Expect = 0.029
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 55 VSCGWDRTVKVWHLTNCKLKINHL-GHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDG 231
+S D T ++W + GH G +NTV PDG +G D L+D+ G
Sbjct: 221 ISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTG 280
Query: 232 KHL 240
L
Sbjct: 281 HQL 283
Score = 33.5 bits (73), Expect = 0.16
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Frame = +1
Query: 7 WVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLG---HSGY-LNTVTVSPDGS 174
+VSC ++ PN +I S G D+T +W +T LK + G SG+ + ++VS GS
Sbjct: 158 YVSCCQYVPNEDAHLITSSG-DQTCILWDVTT-GLKTSVFGGEFQSGHTADVLSVSISGS 215
Query: 175 ---LCASGGKDMKAMLWD 219
SG D A LWD
Sbjct: 216 NPNWFISGSCDSTARLWD 233
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 35.9 bits (79), Expect = 0.029
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 55 VSCGWDRTVKVWHLTNCKLKINHL-GHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDG 231
+S D T ++W + GH G +NTV PDG +G D L+D+ G
Sbjct: 159 ISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTG 218
Query: 232 KHL 240
L
Sbjct: 219 HQL 221
Score = 33.5 bits (73), Expect = 0.16
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Frame = +1
Query: 7 WVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLG---HSGY-LNTVTVSPDGS 174
+VSC ++ PN +I S G D+T +W +T LK + G SG+ + ++VS GS
Sbjct: 96 YVSCCQYVPNEDAHLITSSG-DQTCILWDVTT-GLKTSVFGGEFQSGHTADVLSVSISGS 153
Query: 175 ---LCASGGKDMKAMLWD 219
SG D A LWD
Sbjct: 154 NPNWFISGSCDSTARLWD 171
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 35.9 bits (79), Expect = 0.029
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 55 VSCGWDRTVKVWHLTNCKLKINHL-GHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDG 231
+S D T ++W + GH G +NTV PDG +G D L+D+ G
Sbjct: 221 ISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTG 280
Query: 232 KHL 240
L
Sbjct: 281 HQL 283
Score = 33.5 bits (73), Expect = 0.16
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Frame = +1
Query: 7 WVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLG---HSGY-LNTVTVSPDGS 174
+VSC ++ PN +I S G D+T +W +T LK + G SG+ + ++VS GS
Sbjct: 158 YVSCCQYVPNEDAHLITSSG-DQTCILWDVTT-GLKTSVFGGEFQSGHTADVLSVSISGS 215
Query: 175 ---LCASGGKDMKAMLWD 219
SG D A LWD
Sbjct: 216 NPNWFISGSCDSTARLWD 233
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 35.9 bits (79), Expect = 0.029
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 49 IIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLW--DL 222
++ S WD T+KVW + + K + H +N+V +S L +G D +W +L
Sbjct: 249 LLYSSSWDTTIKVWRIADSKCLESIHAHDDAINSV-MSGFDDLVFTGSADGTVKVWKREL 307
Query: 223 NDGKHLHTLDQMI 261
HTL Q++
Sbjct: 308 QGKGTKHTLAQVL 320
>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); WDVCF
variant 1 (gi:12006981) [Mus musculus]
Length = 386
Score = 35.9 bits (79), Expect = 0.029
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +1
Query: 49 IIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDL 222
I + GWD ++V++ H N V+ SPD L AS +D LW L
Sbjct: 322 IAATAGWDHRIRVYNYRKGNALAILKYHRATCNAVSYSPDCELMASASEDATVALWKL 379
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 35.9 bits (79), Expect = 0.029
Identities = 21/78 (26%), Positives = 34/78 (43%)
Frame = +1
Query: 19 VRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKD 198
+ +SP+ + ++ S D TV +W++ GH + VT P GS AS D
Sbjct: 124 LNWSPDDS--MLASGSLDNTVHIWNMRTGMCTTVLRGHLSLVKGVTWDPIGSFIASQSDD 181
Query: 199 MKAMLWDLNDGKHLHTLD 252
++W +D H D
Sbjct: 182 KTVIIWRTSDWGMAHRTD 199
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 100 NCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDG 231
N K + GH+ + + SPD S+ ASG D +W++ G
Sbjct: 107 NWKAVMTLRGHTADVVDLNWSPDDSMLASGSLDNTVHIWNMRTG 150
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 35.9 bits (79), Expect = 0.029
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVT--VSPDGS 174
S +V V F+P N S DRT+K+W+L + H +N V D
Sbjct: 142 SHYVMQVVFNPKDTNTF-ASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKP 200
Query: 175 LCASGGKDMKAMLWDLNDGKHLHTLD 252
+G D A +WD + TLD
Sbjct: 201 YLITGSDDHTAKVWDYQTKSCVQTLD 226
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/81 (22%), Positives = 34/81 (41%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
V+CV + P +++ D T KVW GH+ ++ V P+ + +G
Sbjct: 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITG 247
Query: 190 GKDMKAMLWDLNDGKHLHTLD 252
+D +W + +TL+
Sbjct: 248 SEDGTVRIWHATTYRLENTLN 268
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHL-TNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLND 228
+V+ D ++V++ T K+K+ HS Y+ V V P S DM LWD +
Sbjct: 72 VVAGADDMYIRVYNYNTMDKVKVFE-AHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEN 130
Query: 229 G 231
G
Sbjct: 131 G 131
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 35.9 bits (79), Expect = 0.029
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVT--VSPDGS 174
S +V V F+P N S DRT+K+W+L + H +N V D
Sbjct: 142 SHYVMQVVFNPKDTNTF-ASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKP 200
Query: 175 LCASGGKDMKAMLWDLNDGKHLHTLD 252
+G D A +WD + TLD
Sbjct: 201 YLITGSDDHTAKVWDYQTKSCVQTLD 226
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/81 (22%), Positives = 34/81 (41%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
V+CV + P +++ D T KVW GH+ ++ V P+ + +G
Sbjct: 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITG 247
Query: 190 GKDMKAMLWDLNDGKHLHTLD 252
+D +W + +TL+
Sbjct: 248 SEDGTVRIWHATTYRLENTLN 268
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHL-TNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLND 228
+V+ D ++V++ T K+K+ HS Y+ V V P S DM LWD +
Sbjct: 72 VVAGADDMYIRVYNYNTMDKVKVFE-AHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEN 130
Query: 229 G 231
G
Sbjct: 131 G 131
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 35.9 bits (79), Expect = 0.029
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVT--VSPDGS 174
S +V V F+P N S DRT+K+W+L + H +N V D
Sbjct: 142 SHYVMQVVFNPKDTNTF-ASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKP 200
Query: 175 LCASGGKDMKAMLWDLNDGKHLHTLD 252
+G D A +WD + TLD
Sbjct: 201 YLITGSDDHTAKVWDYQTKSCVQTLD 226
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/81 (22%), Positives = 34/81 (41%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
V+CV + P +++ D T KVW GH+ ++ V P+ + +G
Sbjct: 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITG 247
Query: 190 GKDMKAMLWDLNDGKHLHTLD 252
+D +W + +TL+
Sbjct: 248 SEDGTVRIWHATTYRLENTLN 268
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHL-TNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLND 228
+V+ D ++V++ T K+K+ HS Y+ V V P S DM LWD +
Sbjct: 72 VVAGADDMYIRVYNYNTMDKVKVFE-AHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEN 130
Query: 229 G 231
G
Sbjct: 131 G 131
>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400) (1
weak); similar to Hypothetical RAE1-like
protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
mRNA-associated protein mrnp 41 ((mRNA export protein)
(GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
[Homo sapiens]
Length = 349
Score = 35.5 bits (78), Expect = 0.039
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINH-----LGHSGYLNTVTVSP 165
+D +S + FSP I+V+ WD V+ W ++ + + H +
Sbjct: 25 ADSISSLSFSPRA--DILVATSWDNQVRCWEISRSGASLASAPKASISHDQPVLCSAWKD 82
Query: 166 DGSLCASGGKDMKAMLWDLNDG 231
DG+ SGG D +A +W L G
Sbjct: 83 DGTTVFSGGCDKQAKMWPLLSG 104
Score = 32.3 bits (70), Expect = 0.36
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDG 231
+ S G D+ K+W L + + H G + + P +L A+G D WD
Sbjct: 87 VFSGGCDKQAKMWPLLSGGQPVTVAMHEGPIAAMAWIPGMNLLATGSWDKTLKYWDTRQQ 146
Query: 232 KHLHT 246
+HT
Sbjct: 147 NPVHT 151
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +3
Query: 252 PNDIITALCFSPNRYWLCA-AFGPSIKIWDLESKEMVEELRPEIINQTQTSKTDPPQCLS 428
P D I++L FSP L A ++ ++ W++ P+ S P C
Sbjct: 24 PADSISSLSFSPRADILVATSWDNQVRCWEISRSGASLASAPK----ASISHDQPVLCS- 78
Query: 429 LAWSTDGQTLFAGYSD 476
AW DG T+F+G D
Sbjct: 79 -AWKDDGTTVFSGGCD 93
>At4g38480.1 68417.m05438 transducin family protein / WD-40 repeat
family protein contains contains Pfam PF00400: WD
domain, G-beta repeat (7 copies, 3 weak);similar to gene
PC326 protein - mouse, PIR2:S37694
Length = 471
Score = 35.1 bits (77), Expect = 0.051
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 130 HSGYLNTVTVSPDGSLCASGGKDMKAMLWD 219
H G +NTV+ + DG + SG D + +LWD
Sbjct: 54 HKGCVNTVSFNADGDILLSGSDDRQVILWD 83
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 35.1 bits (77), Expect = 0.051
Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 2/118 (1%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVT--VSPDGS 174
S +V V F+P N S DRT+K+W+L + H +N V D
Sbjct: 142 SHYVMQVTFNPKDTNTF-ASASLDRTIKIWNLGSPDPNFTLDAHLKGVNCVDYFTGGDKP 200
Query: 175 LCASGGKDMKAMLWDLNDGKHLHTLDQMISSRPCASHPTDTGYVLLSDLPSRSGIWKA 348
+G D A +WD + TL+ + S + ++ IW A
Sbjct: 201 YLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPELPIIITGSEDGTVRIWHA 258
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/81 (22%), Positives = 35/81 (43%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
V+CV + P +++ D T KVW GH+ ++ V+ P+ + +G
Sbjct: 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPELPIIITG 247
Query: 190 GKDMKAMLWDLNDGKHLHTLD 252
+D +W + +TL+
Sbjct: 248 SEDGTVRIWHATTYRLENTLN 268
Score = 32.7 bits (71), Expect = 0.27
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLK--INH-------LGH-SGYLNTVTV 159
VS V F P PII++ D TV++WH T +L+ +N+ +GH G V
Sbjct: 232 VSAVSFHPEL--PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGHIKGSRRVVIG 289
Query: 160 SPDGSLCASGGKDMKAMLWDLNDGK 234
+GS+ G+++ D N GK
Sbjct: 290 YDEGSIMVKLGREIPVASMD-NSGK 313
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 35.1 bits (77), Expect = 0.051
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVT--VSPDGS 174
S +V V F+P N S DRT+K+W+L + H +N V D
Sbjct: 142 SHYVMQVTFNPKDTNTF-ASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKP 200
Query: 175 LCASGGKDMKAMLWDLNDGKHLHTLD 252
+G D A +WD + TL+
Sbjct: 201 YLITGSDDHTAKVWDYQTKSCVQTLE 226
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/81 (22%), Positives = 34/81 (41%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
V+CV + P +++ D T KVW GH+ ++ V P+ + +G
Sbjct: 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG 247
Query: 190 GKDMKAMLWDLNDGKHLHTLD 252
+D +W + +TL+
Sbjct: 248 SEDGTVRIWHATTYRLENTLN 268
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHL-TNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLND 228
+V+ D ++V++ T K+K+ HS Y+ V V P S DM LWD
Sbjct: 72 VVAGADDMYIRVYNYNTMDKVKVFE-AHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130
Query: 229 G 231
G
Sbjct: 131 G 131
>At1g15850.1 68414.m01902 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
mRNA-associated protein mrnp 41 (SP:P78406) [Homo
sapiens]; similar to mitotic checkpoint protein
GI:9294423 from [Arabidopsis thaliana]
Length = 140
Score = 35.1 bits (77), Expect = 0.051
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINH-----LGHSGYLNTVTVSP 165
+D +S + FSP I+V+ WD V+ W +T I + H +
Sbjct: 26 TDSISSLSFSPKA--DILVATSWDCQVRCWEITRSDGSIASEPKVSMSHDQPVLCSAWKD 83
Query: 166 DGSLCASGGKDMKAMLWDLNDGKHLHTL 249
DG+ +GG D +A +W L G T+
Sbjct: 84 DGTTVFTGGCDKQAKMWPLLSGAQPSTV 111
Score = 31.1 bits (67), Expect = 0.84
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +3
Query: 234 TPPHLRPNDIITALCFSPNRYWLCA-AFGPSIKIWDLESKEMVEELRPEIINQTQTSKTD 410
TPP D I++L FSP L A ++ ++ W++ + I ++ + S +
Sbjct: 22 TPP---ATDSISSLSFSPKADILVATSWDCQVRCWEITRSD------GSIASEPKVSMSH 72
Query: 411 PPQCLSLAWSTDGQTLFAGYSD 476
L AW DG T+F G D
Sbjct: 73 DQPVLCSAWKDDGTTVFTGGCD 94
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 35.1 bits (77), Expect = 0.051
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 37 HANPIIVSCGWDRT-VKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAML 213
H + +I+ G ++ VK+W + + GH+G + +++ S +G A+ D L
Sbjct: 363 HPDGLILGTGTAQSIVKIWDVKSQANVAKFGGHNGEITSISFSENGYFLATAALD-GVRL 421
Query: 214 WDLNDGKHLHTLD 252
WDL K+ T D
Sbjct: 422 WDLRKLKNFRTFD 434
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Frame = +1
Query: 37 HANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLW 216
H+ +I + G D T ++ + ++ GHS + ++ D L + D +W
Sbjct: 232 HSKDVIATGGIDTTAVLFDRPSGQILSTLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIW 291
Query: 217 DLN-DGKHL--HTL-DQMISSRPCASHPTDTGYVLLS 315
+ DG + HTL D R H T+ +V S
Sbjct: 292 GCSEDGNYTSRHTLKDHSAEVRAVTVHATNKYFVSAS 328
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 255 NDIITALCFSPNRYWLCAAFGPSIKIWDL 341
N IT++ FS N Y+L A +++WDL
Sbjct: 396 NGEITSISFSENGYFLATAALDGVRLWDL 424
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 34.7 bits (76), Expect = 0.068
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = +1
Query: 28 SPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKA 207
SP A ++ + G D +W + N GH ++ + S DG L ASGG D
Sbjct: 79 SPTDAT-LVATGGGDDKAFLWKIGNGDWAAELPGHKDSVSCLAFSYDGQLLASGGLDGVV 137
Query: 208 MLWDLNDGKHLHTLD 252
++D + G LD
Sbjct: 138 QIFDASSGTLKCVLD 152
Score = 31.9 bits (69), Expect = 0.48
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGS-- 174
++ ++C+ + N + + +S D +V + ++ K+ + H+ + V SP +
Sbjct: 242 TEGLTCLDINSNSS--LAISGSKDGSVHIVNIVTGKVVSSLNSHTDSVECVKFSPSSATI 299
Query: 175 -LCASGGKDMKAMLWDL 222
L A+GG D K ++WDL
Sbjct: 300 PLAATGGMDKKLIIWDL 316
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 33.9 bits (74), Expect = 0.12
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 7/144 (4%)
Frame = +1
Query: 19 VRFSPNHANPIIVSCGWDRTVKVWH-LTNCKLKINHL--GHSGYLNTVTVSPDGSLCASG 189
V+FS ++ + + D T +W L + K+++ H H ++ V+ SPD + +
Sbjct: 230 VQFS--NSGKYLATASSDCTAIIWKVLDDNKVELKHTLESHQNPVSFVSWSPDDTKLLTC 287
Query: 190 GKDMKAMLWDLNDGKHLHTL---DQMISSRPCASHPTDTGYVLLSDLPSRSGI-WKARRW 357
G LWD++ G HT + + CA P T V S P R + W
Sbjct: 288 GNAEVLKLWDVDTGVLRHTFGNNNTGFTVSSCAWFPDSTRLVCGSSDPERGIVMWDT--- 344
Query: 358 LKSSGLKSLTKHKLPRQTLLSVSP 429
+ +K+ ++P+ L+V+P
Sbjct: 345 -DGNEIKAWRGTRIPKVVDLAVTP 367
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 166 DGSLCASGGKDMKAMLWDLNDGKHLHTLDQMISSRPCAS 282
D S ASG +D + +W+L + K L L + C S
Sbjct: 454 DSSFIASGSEDSQVYIWNLKNTKPLEVLSGHSMTVNCVS 492
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 33.9 bits (74), Expect = 0.12
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +1
Query: 28 SPNHANPIIVSCGW-DRTVKVWHLTNCKLK--INHLGHSGYLNTVTVSPDGS-LCASGGK 195
S N + P +++ G DRTVK+W L+N + H ++G L + SPD L A GG
Sbjct: 376 SYNISAPNLLATGSKDRTVKLWDLSNNEPSCIATHNPNAGGLFFIAFSPDNPFLLAMGGV 435
Query: 196 DMKAMLWD 219
+ LWD
Sbjct: 436 MGELKLWD 443
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 33.9 bits (74), Expect = 0.12
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Frame = +1
Query: 1 SDWVSCVRFSP--NHAN---PIIVSCGWDRTVKVWHLTN------CKLKINHLGHSGYLN 147
+D V V ++P +HA+ PI+ SC D TV++W ++ CK + H+ +
Sbjct: 20 TDRVWSVAWNPVSSHADGVSPILASCSGDNTVRIWEQSSLSRSWTCKTVLEET-HTRTVR 78
Query: 148 TVTVSPDGSLCASGGKDMKAMLW 216
+ SP G L A+ D +W
Sbjct: 79 SCAWSPSGQLLATASFDGTTGIW 101
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +1
Query: 13 SCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLK-INHL-GHSGYLNTVTVSPDGSLCAS 186
SC +SP+ ++ + +D T +W + + I+ L GH + +V+ + GS A+
Sbjct: 79 SCA-WSPS--GQLLATASFDGTTGIWKNYGSEFECISTLEGHENEVKSVSWNASGSCLAT 135
Query: 187 GGKDMKAMLWDLNDG 231
+D +W++ +G
Sbjct: 136 CSRDKSVWIWEVLEG 150
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHL 96
V+ V++SP N ++ S D VK+W L
Sbjct: 320 VNSVQWSPGEGNRLLASASDDGMVKIWQL 348
>At4g35140.1 68417.m04996 transducin family protein / WD-40 repeat
family protein contains 6 (3 significant) WD-40 repeats;
similar to PC326 protein (GI:200241) (PIR2:S37694)
[Mus musculus]; Human (H326) mRNA, Homo sapiens,
gb:U06631
Length = 496
Score = 33.5 bits (73), Expect = 0.16
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 130 HSGYLNTVTVSPDGSLCASGGKDMKAMLWD 219
H G +NTV+ + +G + SG D + +LWD
Sbjct: 58 HKGCVNTVSFNAEGDVLISGSDDRRVVLWD 87
>At3g42660.1 68416.m04436 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400); AND-1
protein - Homo sapiens, EMBL:AJ006266
Length = 951
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +1
Query: 109 LKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHL--HTLDQMISSRPCAS 282
L+ +HL YL T +P+G A+ G D + +LWD++ + + H ++ I C S
Sbjct: 233 LRGDHLEAICYL---TWAPNGKYIATSGLDKQVLLWDVDKKQDIDRHKFEERIC---CMS 286
Query: 283 HPTDTGYVLLSDLPSRSGIWKA 348
+ + + D R G+W++
Sbjct: 287 WKPNGNALSVIDAKGRYGVWES 308
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/72 (23%), Positives = 32/72 (44%)
Frame = +1
Query: 34 NHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAML 213
N + ++ + G D +K+ + + + GH G + + P+G L AS +
Sbjct: 113 NGSGSLLAAAGDDEGIKLINTFDGSIVRVLKGHKGPVTGLDFHPNGELLASIDTTGTVLC 172
Query: 214 WDLNDGKHLHTL 249
W+L +G TL
Sbjct: 173 WELQNGVVSFTL 184
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +1
Query: 70 DRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTL 249
D T+K W L + L GH ++T+ V + SG D LW L+D L L
Sbjct: 606 DNTIKAWSLQDGSLLCTMSGHKSVVSTLVVV--NGVLYSGSWDGTVRLWSLSDNSLLTVL 663
Query: 250 DQ 255
+
Sbjct: 664 GE 665
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +1
Query: 127 GHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMISSRPCASHPTDTGYV 306
GH G + + + + AS D A LWD G LH+ + R CA DT Y+
Sbjct: 59 GHKGAVWSSCLDNNALRAASASADFSAKLWDALTGDVLHSFEHKHIVRACA-FSQDTKYL 117
Query: 307 L 309
+
Sbjct: 118 I 118
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/69 (24%), Positives = 28/69 (40%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
+ P N + G D V+++ K + GH G ++ V +P G ASG
Sbjct: 230 IESASLEPKSGNKFVAG-GEDMWVRLFDFHTGKEIGCNKGHHGPVHCVRFAPTGESYASG 288
Query: 190 GKDMKAMLW 216
+D +W
Sbjct: 289 SEDGTIRIW 297
>At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies, 1
significant); similar to Trp-Asp repeat protein
(PIR:T40094) [Schizosaccharomyces]
Length = 447
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 115 INHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMIS-SRPCASHP 288
+ H +N ++SPDG L A G + + ++ D N GK L TL + S A HP
Sbjct: 271 VKHFRFPWPVNHASLSPDGKLLAIVGDNPEGLIVDPNTGKTLETLSGHLDFSFASAWHP 329
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 32.7 bits (71), Expect = 0.27
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHLTNCKLKINHL----GHSGYLNTVTVSPD----GSLCASGGKDMKA 207
+ S G D TVKVW L N K++ H+ ++ V +P+ S ASG +D K
Sbjct: 179 LASGGCDNTVKVWKLANGSWKMDCFPALQKHTDWVRDVAWAPNLGLPKSTIASGSQDGKV 238
Query: 208 MLW 216
++W
Sbjct: 239 IIW 241
>At2g18900.1 68415.m02205 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to LACK protective antigen (GI:13625467)
[Leishmania donovani]
Length = 804
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 130 HSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGK 234
HS +N + S DG+ SGG++ ++W L+ GK
Sbjct: 282 HSAEVNVLNFSSDGAYLYSGGREGVLVVWQLDTGK 316
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/78 (23%), Positives = 38/78 (48%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLC 180
+D+V+CV+F+P + +S D +++W+++N ++ + + V +PDG
Sbjct: 559 NDYVTCVQFNPLDED-YFISGSLDAKIRIWNISNRQV-VEWNDLKEMVTAVCYTPDGQAA 616
Query: 181 ASGGKDMKAMLWDLNDGK 234
G + L+ D K
Sbjct: 617 FVGSINGHCRLYSAEDCK 634
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 130 HSGYLNTVTVSPDGSLCASGGKDMKAMLWDLND 228
H G + T+ SPD L AS G+D +W++ +
Sbjct: 410 HQGGIWTMKFSPDSHLLASAGEDCAIHVWEVQE 442
>At5g66240.2 68418.m08345 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 331
Score = 31.9 bits (69), Expect = 0.48
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = +1
Query: 34 NHANPIIVSC--GWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKA 207
+H +I S GWD ++++ L + K GH + ++++ G SG D
Sbjct: 85 SHPTTVIYSSRNGWDDSLRLLSLHDNKYLRYFKGHHDRVVSLSLCSGGECFISGSLDRTV 144
Query: 208 MLWDLNDGKHLHTLDQMISSRPCASHPTDTGYV 306
+LWD K L + RP A++ D G +
Sbjct: 145 LLWDQRVEKCQGLL--RVQGRPAAAY-DDQGLI 174
>At5g66240.1 68418.m08344 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 328
Score = 31.9 bits (69), Expect = 0.48
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = +1
Query: 34 NHANPIIVSC--GWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKA 207
+H +I S GWD ++++ L + K GH + ++++ G SG D
Sbjct: 82 SHPTTVIYSSRNGWDDSLRLLSLHDNKYLRYFKGHHDRVVSLSLCSGGECFISGSLDRTV 141
Query: 208 MLWDLNDGKHLHTLDQMISSRPCASHPTDTGYV 306
+LWD K L + RP A++ D G +
Sbjct: 142 LLWDQRVEKCQGLL--RVQGRPAAAY-DDQGLI 171
>At5g58760.1 68418.m07360 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
damage-specific DNA binding protein 2 (GI:10798819)
[Homo sapiens]
Length = 557
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +1
Query: 49 IIVSCGWDRTVKVWHLTNC--KLKINHLGHSGYLNTVTVSP-DGSLCASGGKDMKAMLWD 219
+++SCG D ++W + K ++ L H +N+ SP G+ + +D + +WD
Sbjct: 327 LLLSCGNDHFARIWDMRKLQPKASLHDLAHKRVVNSAYFSPSSGTKILTTCQDNRIRIWD 386
>At4g21520.1 68417.m03110 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to guanine nucleotide-binding protein beta 5
(GI:1001939) [Mesocricetus auratus]
Length = 425
Score = 31.9 bits (69), Expect = 0.48
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
+S + FSP ++ + V + +T ++ N +L G G + V S DG+ +G
Sbjct: 215 LSTLAFSPTNSGMLAVG-SYGQTTGIYREDNMELLYVLHGQEGGVTHVQFSKDGNYLYTG 273
Query: 190 G-KDMKAMLWDL 222
G KD + WD+
Sbjct: 274 GRKDPYILCWDI 285
>At4g07410.1 68417.m01136 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400) (2
weak); similar to Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 815
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +1
Query: 49 IIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLN 225
++VS TV+ W + L H H G +NT+ +P + S G D + +L+ L+
Sbjct: 261 VLVSGDSTGTVQFWDSEHGTLLEAHSNHKGDVNTLAAAPSHNRVFSAGADGQVILYKLS 319
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 31.9 bits (69), Expect = 0.48
Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 13/155 (8%)
Frame = +1
Query: 1 SDW-VSC--VRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDG 171
S W V C V+ + N ++ + D ++++ + K+ GH+ + + S DG
Sbjct: 510 SQWDVGCSLVKIVYHRVNGLLATVADDFVIRLYDVVTLKMVREFRGHTDRITDLCFSEDG 569
Query: 172 SLCASGGKDMKAMLWDL-----NDGKHLHTLDQMISSRP-----CASHPTDTGYVLLSDL 321
S D +WD+ DG H+ +S P +H G L +
Sbjct: 570 KWVISSSMDGSLRIWDVILAKQIDGVHVDVPITALSLSPNMDVLATAHSDQNGVYLWVNQ 629
Query: 322 PSRSGIWKARRWLKSSGLKSLTKHKLPRQTLLSVS 426
SG+ + +SG K + KLP + L+ S
Sbjct: 630 SMFSGLPSVESY--ASG-KDVVNVKLPSVSALTSS 661
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 255 NDIITALCFSP--NRYWLCAAFGPSIKIWDLESKEMVE 362
ND +T + FSP Y+L + I+IW ++ + +VE
Sbjct: 546 NDYVTCIQFSPVDENYFLSGSLDAKIRIWSIQDRHVVE 583
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 31.5 bits (68), Expect = 0.63
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +1
Query: 13 SCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGG 192
SCV F P + + +++ C +++++W+++ K + H G + ++ VS L AS
Sbjct: 867 SCV-FHPAYPSLLVIGCY--QSLELWNMSENKT-MTLPAHEGLITSLAVSTATGLVASAS 922
Query: 193 KDMKAMLW 216
D LW
Sbjct: 923 HDKLVKLW 930
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 160 SPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQ 255
S DG + AS G D KA+LW + K TL++
Sbjct: 660 SSDGKMLASAGHDKKAVLWYTDTMKPKTTLEE 691
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Frame = +1
Query: 19 VRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKD 198
+RF P + S V V + ++ + GH+ +N+V P G AS +D
Sbjct: 782 IRFQPRVGKYLAASSA--NLVNVLDVETQAIRHSLQGHANPINSVCWDPSGDFLASVSED 839
Query: 199 MKAMLWDL---NDGKHLHTLD-QMISSRPCASHP 288
M +W L ++G+ +H L + C HP
Sbjct: 840 M-VKVWTLGTGSEGECVHELSCNGNKFQSCVFHP 872
>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); some
similarity to a group of proteins with homology to
mammalian apoptosis regulators identified in zebrafish
(PUBMED:10917738)Apaf-1(gi:7677507)
Length = 537
Score = 31.5 bits (68), Expect = 0.63
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 130 HSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMISSRPCASHPTDTGYV- 306
H+ + VS DG A+GG D LWD+ +H+ + + H TG+
Sbjct: 205 HNKQSLALAVSSDGRYLATGGVDCHVHLWDIRTREHVQVNKLKNNQVKDSVHCAFTGHCG 264
Query: 307 LLSDLPSRSG 336
++S L R G
Sbjct: 265 IVSSLCFREG 274
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice sites
at introns 4 and 6
Length = 1017
Score = 31.5 bits (68), Expect = 0.63
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = +1
Query: 34 NHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPD-GSLCASGGKDMKAM 210
N+ + S +D VK+W +T + + + H +V S + ASG D
Sbjct: 763 NYIRNYLASSDYDGIVKLWDVTTGQAISHFIEHEKRAWSVDFSEACPTKLASGSDDCSVK 822
Query: 211 LWDLNDGKHLHTLDQMISSRPCASHPTDTGYVL 309
LW++N+ L T+ + I++ C + ++L
Sbjct: 823 LWNINERNCLGTI-RNIANVCCVQFSPQSSHLL 854
>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats; similar to
PC326 protein (GI:200241) (PIR2:S37694) [Mus
musculus];Human (H326) translated mRNA - Homo sapiens,
EMBL:HS06631
Length = 481
Score = 31.5 bits (68), Expect = 0.63
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 127 GHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDG 231
GH G +N V + G + SG D + MLW+ G
Sbjct: 53 GHEGCVNAVEFNSTGDVLVSGSDDRQIMLWNWLSG 87
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 31.5 bits (68), Expect = 0.63
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHLTNCKLKINHL----GHSGYLNTVTVSPD----GSLCASGGKDMKA 207
+ S G D TVKVW +N K++ H+ ++ V +P+ S ASG +D K
Sbjct: 179 LASGGCDSTVKVWKFSNGSWKMDCFPALNKHTDWVRDVAWAPNLGLPKSTIASGSEDGKV 238
Query: 208 MLWDL 222
++W +
Sbjct: 239 IIWTI 243
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 31.5 bits (68), Expect = 0.63
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +1
Query: 115 INHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHL 240
+ + GH+G + +++ G ASG D +W++ G+ L
Sbjct: 417 LEYKGHTGAVTSISTDSSGEWIASGSTDGSVRMWEVETGRCL 458
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 31.5 bits (68), Expect = 0.63
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Frame = +1
Query: 37 HANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLW 216
H+ +I + G D T ++ + ++ GHS + +V D L + D +W
Sbjct: 232 HSKDVIATGGVDATAVLFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTASADKTVRIW 291
Query: 217 -DLNDGKHL--HTL-DQMISSRPCASHPTDTGYVLLS 315
+ DG + +TL D R HPT+ +V S
Sbjct: 292 RNPGDGNYACGYTLNDHSAEVRAVTVHPTNKYFVSAS 328
Score = 31.5 bits (68), Expect = 0.63
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 37 HANPIIVSCGWDRTV-KVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAML 213
H + +I+ G ++V K+W + + GH+G + ++ S +G A+ +D L
Sbjct: 362 HPDGLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAAED-GVRL 420
Query: 214 WDL 222
WDL
Sbjct: 421 WDL 423
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 264 ITALCFSPNRYWLCAAFGPSIKIWDL 341
+TA+ FS N Y+L A +++WDL
Sbjct: 398 VTAISFSENGYFLATAAEDGVRLWDL 423
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Frame = +1
Query: 49 IIVSCGWDRTVKVWHLTN-----CKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAML 213
++++ D+TV++W C +N HS + VTV P S D
Sbjct: 278 LVLTASADKTVRIWRNPGDGNYACGYTLND--HSAEVRAVTVHPTNKYFVSASLDGTWCF 335
Query: 214 WDLNDGKHL 240
+DL+ G L
Sbjct: 336 YDLSSGSCL 344
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 31.5 bits (68), Expect = 0.63
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Frame = +1
Query: 37 HANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLW 216
H+ +I + G D T ++ + ++ GHS + +V D L + D +W
Sbjct: 232 HSKDVIATGGVDATAVLFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTASADKTVRIW 291
Query: 217 -DLNDGKHL--HTL-DQMISSRPCASHPTDTGYVLLS 315
+ DG + +TL D R HPT+ +V S
Sbjct: 292 RNPGDGNYACGYTLNDHSAEVRAVTVHPTNKYFVSAS 328
Score = 31.5 bits (68), Expect = 0.63
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 37 HANPIIVSCGWDRTV-KVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAML 213
H + +I+ G ++V K+W + + GH+G + ++ S +G A+ +D L
Sbjct: 362 HPDGLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAAED-GVRL 420
Query: 214 WDL 222
WDL
Sbjct: 421 WDL 423
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 264 ITALCFSPNRYWLCAAFGPSIKIWDL 341
+TA+ FS N Y+L A +++WDL
Sbjct: 398 VTAISFSENGYFLATAAEDGVRLWDL 423
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Frame = +1
Query: 49 IIVSCGWDRTVKVWHLTN-----CKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAML 213
++++ D+TV++W C +N HS + VTV P S D
Sbjct: 278 LVLTASADKTVRIWRNPGDGNYACGYTLND--HSAEVRAVTVHPTNKYFVSASLDGTWCF 335
Query: 214 WDLNDGKHL 240
+DL+ G L
Sbjct: 336 YDLSSGSCL 344
>At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 (1
significant) WD-40 repeats (PF0400); similar to Trp-Asp
repeat protein (PIR:T40094) [Schizosaccharomyces]
Length = 445
Score = 31.5 bits (68), Expect = 0.63
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +1
Query: 142 LNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMIS-SRPCASHPTDTGYVLLSD 318
+N ++SPDG L G + +++L D N GK L TL + S A HP G+ +
Sbjct: 278 VNHTSLSPDGKLLTIVGDNPESLLVDPNTGKTLATLSGHLDFSFASAWHP--DGFTFSTG 335
Query: 319 LPSRS-GIWKARRWLKS 366
++ +W R KS
Sbjct: 336 NQDKTCRVWDIRNLSKS 352
>At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 447
Score = 31.1 bits (67), Expect = 0.84
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +1
Query: 142 LNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMIS-SRPCASHPTDTGYVLLSD 318
+N ++SPDG L A G D +L D ++G+ + TL + S A HP + +
Sbjct: 280 VNHSSLSPDGKLVAVVGDDPDGLLVDTSNGQTIGTLKGHLDYSFASAWHPNGVTFA-TGN 338
Query: 319 LPSRSGIWKARRWLKS 366
IW R+ +S
Sbjct: 339 QDKTCRIWDTRKLSES 354
>At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 441
Score = 31.1 bits (67), Expect = 0.84
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +1
Query: 142 LNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMIS-SRPCASHPTDTGYVLLSD 318
+N ++SPDG L A G D +L D ++G+ + TL + S A HP + +
Sbjct: 274 VNHSSLSPDGKLVAVVGDDPDGLLVDTSNGQTIGTLKGHLDYSFASAWHPNGVTFA-TGN 332
Query: 319 LPSRSGIWKARRWLKS 366
IW R+ +S
Sbjct: 333 QDKTCRIWDTRKLSES 348
>At5g50650.1 68418.m06276 WD-40 repeat family protein / St12p
protein, putative contains 4 WD-40 repeats (PF0400);
similar to St12p protein GI:166878 [Arabidopsis
thaliana]
Length = 383
Score = 31.1 bits (67), Expect = 0.84
Identities = 22/83 (26%), Positives = 37/83 (44%)
Frame = +3
Query: 258 DIITALCFSPNRYWLCAAFGPSIKIWDLESKEMVEELRPEIINQTQTSKTDPPQCLSLAW 437
D+ + P + L A S +++D E+ ++E+ E + D Q LSL++
Sbjct: 93 DLPYRMAIHPRQGGLICALPNSCRLFDWEN--IIEDDNEEESEKVVKELKDVGQQLSLSF 150
Query: 438 STDGQTLFAGYSDNTKEFGRFPS 506
+ DG L G D T +PS
Sbjct: 151 NQDGTVLATGAEDGTLRVFEWPS 173
>At5g50550.1 68418.m06260 WD-40 repeat family protein / St12p
protein, putative contains 4 WD-40 repeats (PF0400);
similar to St12p protein GI:166878 [Arabidopsis
thaliana]
Length = 383
Score = 31.1 bits (67), Expect = 0.84
Identities = 22/83 (26%), Positives = 37/83 (44%)
Frame = +3
Query: 258 DIITALCFSPNRYWLCAAFGPSIKIWDLESKEMVEELRPEIINQTQTSKTDPPQCLSLAW 437
D+ + P + L A S +++D E+ ++E+ E + D Q LSL++
Sbjct: 93 DLPYRMAIHPRQGGLICALPNSCRLFDWEN--IIEDDNEEESEKVVKELKDVGQQLSLSF 150
Query: 438 STDGQTLFAGYSDNTKEFGRFPS 506
+ DG L G D T +PS
Sbjct: 151 NQDGTVLATGAEDGTLRVFEWPS 173
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 31.1 bits (67), Expect = 0.84
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +1
Query: 118 NHL---GHSGYLNTVTVS-PDGSLCA-SGGKDMKAMLWDLNDGKHLHTLD 252
NHL H+G +N + S P+ LC + G+D +WD G LHT +
Sbjct: 456 NHLEIDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAVTGNKLHTFE 505
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVW 90
V+ + FS + +V+CG D+T+KVW
Sbjct: 467 VNDLAFSQPNQQLCVVTCGEDKTIKVW 493
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 31.1 bits (67), Expect = 0.84
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +1
Query: 118 NHL---GHSGYLNTVTVS-PDGSLCA-SGGKDMKAMLWDLNDGKHLHTLD 252
NHL H+G +N + S P+ LC + G+D +WD G LHT +
Sbjct: 456 NHLEIDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAVTGNKLHTFE 505
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVW 90
V+ + FS + +V+CG D+T+KVW
Sbjct: 467 VNDLAFSQPNQQLCVVTCGEDKTIKVW 493
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +1
Query: 130 HSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMISSRPCASHPTDTGY 303
H G + + P SL +G KD + LWD K +H + + R P GY
Sbjct: 2374 HLGSVTKIATIPRTSLFLTGSKDGEVKLWDAKAAKLIHHWPK-LHERHTFLQPNSRGY 2430
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +1
Query: 49 IIVSCGWDRTVKVWHLTNCKLKINHLG-HSGYLNTVTVSPDG-SLCASGGKDMKAMLWDL 222
++ + D TV ++ L ++ + H G + V P+ ++ AS G+D + M+WDL
Sbjct: 275 VLATASSDSTVALFDLRKLNAPLHVMSSHEGEVFQVEWDPNHETVLASSGEDRRLMVWDL 334
Query: 223 N 225
N
Sbjct: 335 N 335
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 130 HSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLD 252
H G + + SPDG AS G+D +W + + + T +
Sbjct: 217 HDGSILAMKFSPDGKYIASAGEDCVVRVWSITEEERTDTYE 257
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPD 168
+++V+CV F+P N +S D V++W +T C++ +++ + V PD
Sbjct: 362 NNFVTCVAFNPVDDN-YFISGSIDGKVRIWDVTRCRV-VDYTDIRDIVTAVCYRPD 415
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 130 HSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLD 252
H G + + SPDG AS G+D +W + + + T +
Sbjct: 217 HDGSILAMKFSPDGKYIASAGEDCVVRVWSITEEERTDTYE 257
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 1 SDWVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPD 168
+++V+CV F+P N +S D V++W +T C++ +++ + V PD
Sbjct: 362 NNFVTCVAFNPVDDN-YFISGSIDGKVRIWDVTRCRV-VDYTDIRDIVTAVCYRPD 415
>At1g52730.2 68414.m05959 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 127 GHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMISSRPCA 279
GH G + + + + AS D A LWD G LH+ + R CA
Sbjct: 59 GHKGAVWSSCLDNNALRAASASADFSAKLWDALTGDVLHSFEHKHIVRACA 109
>At1g52730.1 68414.m05958 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 127 GHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMISSRPCA 279
GH G + + + + AS D A LWD G LH+ + R CA
Sbjct: 59 GHKGAVWSSCLDNNALRAASASADFSAKLWDALTGDVLHSFEHKHIVRACA 109
>At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI3 (SP:O22469) [Arabidopsis thaliana]
Length = 424
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +1
Query: 49 IIVSCGWDRTVKVWHLTNCKLKINHLG-HSGYLNTVTVSPDG-SLCASGGKDMKAMLWDL 222
++ + D TV ++ L ++ L H G + V P+ ++ AS G+D + M+WD+
Sbjct: 276 VLATASSDSTVALFDLRKLTAPLHVLSKHEGEVFQVEWDPNHETVLASSGEDRRLMVWDI 335
Query: 223 N 225
N
Sbjct: 336 N 336
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +1
Query: 70 DRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLN 225
D ++K+ K GH + + +SPD + +G +D +LW ++
Sbjct: 2647 DNSIKLVSSDGAKTLETAFGHCAPVTCLALSPDNNFLVTGSRDSTVLLWRIH 2698
>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
family protein Strong similarity to gb AF096285
serine-threonine kinase receptor-associated protein from
Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
domains. EST gb|F14050 comes from this gene
Length = 333
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +1
Query: 127 GHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMISSRPCA 279
GH G + + ++ + AS D A +W+ G LH+ + R CA
Sbjct: 54 GHKGAVWSCSLDKNAIRAASASADFTAKIWNALTGDELHSFEHKHIVRACA 104
Score = 28.7 bits (61), Expect = 4.5
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHLTNCKLKINHLGHS-GYLNTVT-VSPDGSLCASGGKDMKAMLWDLN 225
+++ G ++ ++++ L +G+S G + TV + D ++ +S LWD+
Sbjct: 112 LLTGGMEKILRIFDLNRPDAPPKEVGNSPGSIRTVEWLHSDNTILSSCTDTGDIRLWDIR 171
Query: 226 DGKHLHTLDQMISSRPCASHPTDTGYVLLSDLPSRSGIWKARRW 357
K +HTL+ S A D Y+ +D S W A+ +
Sbjct: 172 SDKIVHTLETK-SPVTSAEVSQDGRYITTAD-GSSVKFWDAKNF 213
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHL-TNCKLKINHLGHSGYLNTVTVSPDGSLCAS 186
V P H N I G D V + T ++ N GH G ++ V +P G S
Sbjct: 225 VESASLEPKHGNTFIAG-GEDMWVHRFDFQTGEEIGCNK-GHHGPVHCVRYAPGGESYTS 282
Query: 187 GGKDMKAMLWDLNDGKH 237
G +D +W + H
Sbjct: 283 GSEDGTVRIWVVGSVNH 299
>At3g53390.1 68416.m05892 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 558
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/75 (24%), Positives = 35/75 (46%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
++ + FS + A+ + + G D ++++ KL + G L + S DG +G
Sbjct: 306 INSIAFSNDGAH--LATVGRDGYLRIFDFLTQKLVCGGKSYYGALLCCSWSMDGKYILTG 363
Query: 190 GKDMKAMLWDLNDGK 234
G+D +W + D K
Sbjct: 364 GEDDLVQVWSMEDRK 378
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHL----TNCKLKINHL--GHSGYLNTVTVSPDG 171
V+ +RFSP+ ++ S + +W L TN K++ H + + SPD
Sbjct: 67 VNTIRFSPS--GELLASGADGGELFIWKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDD 124
Query: 172 SLCASGGKDMKAMLWDLNDGKHLHTLD 252
+ SG D ++WD+N G LD
Sbjct: 125 AYLISGSVDNSCIIWDVNKGSVHQILD 151
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 130 HSGYLNTVTVSPDGSLCASGGKDMKAMLWDLN 225
H +NT+ SP G L ASG + +W L+
Sbjct: 63 HGCAVNTIRFSPSGELLASGADGGELFIWKLH 94
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHL----TNCKLKINHL--GHSGYLNTVTVSPDG 171
V+ +RFSP+ ++ S + +W L TN K++ H + + SPD
Sbjct: 67 VNTIRFSPS--GELLASGADGGELFIWKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDD 124
Query: 172 SLCASGGKDMKAMLWDLNDGKHLHTLD 252
+ SG D ++WD+N G LD
Sbjct: 125 AYLISGSVDNSCIIWDVNKGSVHQILD 151
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 130 HSGYLNTVTVSPDGSLCASGGKDMKAMLWDLN 225
H +NT+ SP G L ASG + +W L+
Sbjct: 63 HGCAVNTIRFSPSGELLASGADGGELFIWKLH 94
>At5g45760.2 68418.m05626 transducin family protein / WD-40 repeat
family protein
Length = 334
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 10 VSCVRFSP-NHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLN 147
VSCV FS ++S G D+TVK+W C N+ +S L+
Sbjct: 251 VSCVAFSLFQEKGRFLISGGNDKTVKIWDCFKCLDPNNNNNNSDLLH 297
>At5g45760.1 68418.m05625 transducin family protein / WD-40 repeat
family protein
Length = 360
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 10 VSCVRFSP-NHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLN 147
VSCV FS ++S G D+TVK+W C N+ +S L+
Sbjct: 277 VSCVAFSLFQEKGRFLISGGNDKTVKIWDCFKCLDPNNNNNNSDLLH 323
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = +1
Query: 34 NHANPIIVSCGWDRTVKVWHL-TNCKLKINHLGHSGYLNTVTVSPDGSL-CASGGKDMKA 207
N + + S VK+ L C K GH+ ++V P +GG D K
Sbjct: 114 NGRSSFLASADDSGDVKIIDLGQKCLYKTLRAGHTSICSSVQFIPWRPWEVITGGLDSKL 173
Query: 208 MLWDLNDGKHLHTLD 252
+LWD + G+ +D
Sbjct: 174 VLWDFSKGRSQKIID 188
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = +1
Query: 7 WVSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCAS 186
WV VRF P+H+ I+ S D V++W+ T + +HL + + ++ +G L A
Sbjct: 152 WV--VRFHPHHSE-IVASGSLDLEVRLWNTTTSECIRSHLFYRP-IASIAFHAEGELLAV 207
Query: 187 GGKDMKAMLWDLN 225
K +W N
Sbjct: 208 -ASGHKLHMWHYN 219
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 130 HSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHL 240
HS + VS DG A+GG D +WD+ +H+
Sbjct: 221 HSRESLALAVSSDGRYLATGGVDRHVHIWDVRTREHV 257
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSG 138
VSC+ F + + S +DRTVKVW++ + + GH G
Sbjct: 267 VSCLCF--RYGTSELYSGSFDRTVKVWNVEDKAFITENHGHQG 307
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Frame = +1
Query: 34 NHANPIIVSCGWDRTVKVWHLTNCKL-KINHLGHSG------YLNTVTVSPDGS-LCASG 189
NH N ++ S G D+ + +W L + G G L+ ++ S GS SG
Sbjct: 52 NHTNLVVASTGEDKKISLWRKNGQSLGTVPVTGKDGGDSAEECLSAISFSKKGSRYICSG 111
Query: 190 GKDMKAMLWDL 222
G +WDL
Sbjct: 112 GTGQIVKIWDL 122
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +3
Query: 258 DIITALCFSP--NRYWLCAAFGPSIKIWDLESKEMVEELR 371
+ ++A+ FS +RY G +KIWDL+ K +++L+
Sbjct: 93 ECLSAISFSKKGSRYICSGGTGQIVKIWDLQRKLCIKKLK 132
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Frame = +1
Query: 49 IIVSCGWDRTVKVWHLT------NCKLKINHL--GHSGYLNTVTVSPDGSLCASGGKDMK 204
++ SC +D T+K+W NC ++ L GHS + +++ + G + D+
Sbjct: 153 VLFSCSYDNTIKIWCSEDEDGDYNCVQTLSELNNGHSSTVWSISFNAAGDKMVTCSDDLA 212
Query: 205 AMLW 216
+W
Sbjct: 213 VKIW 216
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 127 GHSGYLNTVTVSPDGSLCASGGKDMKAMLWDL 222
GH + +V+ + GSL A+ G+D +W++
Sbjct: 90 GHESEVKSVSWNASGSLLATCGRDKSVWIWEI 121
>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to L. erythrorhizon LEC14B, GenBank accession
number Q40153
Length = 493
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPD-GSLCASGGKDMKAMLWD 219
+V+ D ++ V+ L ++ + + H+ +NTV + + G+L SG D +WD
Sbjct: 244 VVAGSSDDSIYVYDLEANRVSLRTVAHTSDVNTVCFADESGNLILSGSDDNLCKVWD 300
>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 544
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/74 (22%), Positives = 33/74 (44%)
Frame = +1
Query: 121 HLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMISSRPCASHPTDTG 300
H+G G +N++ S DG+ A+ G+D ++D + K + + + C + D
Sbjct: 300 HIGQ-GAINSIAFSNDGAYLATVGRDGYLRIFDFSTQKLVCGVKSYYGALLCCAWSMDGK 358
Query: 301 YVLLSDLPSRSGIW 342
Y+L +W
Sbjct: 359 YLLTGGEDDLVQVW 372
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASG 189
++ + FS + A + + G D ++++ + KL + G L S DG +G
Sbjct: 306 INSIAFSNDGA--YLATVGRDGYLRIFDFSTQKLVCGVKSYYGALLCCAWSMDGKYLLTG 363
Query: 190 GKDMKAMLWDLNDGK 234
G+D +W + D K
Sbjct: 364 GEDDLVQVWSMEDRK 378
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 130 HSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKH 237
H G + + + DG S G D + LWD+ G++
Sbjct: 311 HYGAVTGLKATNDGMYLLSAGSDSRIRLWDIESGRN 346
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDG-SLCASGGKDMKAMLWDLND 228
++SCG+D T +++ + ++ + V PD ++ SGG LWD+
Sbjct: 220 LLSCGYDCTSRLFDVER-GVETQSFKEDEVVGVVKFHPDNCNVFLSGGSKGSLRLWDIRA 278
Query: 229 GKHLH 243
K +H
Sbjct: 279 NKFVH 283
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 127 GHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQ 255
GHSG + V G + SG D +WDLN + + TL Q
Sbjct: 256 GHSGEVTCFAVG--GQMLYSGSVDKTIKMWDLNTLQCIMTLKQ 296
>At2g47790.1 68415.m05965 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; The first 3 exons are
identical to that of GB:AJ224957. This gene appears to
be a truncated version of that in GB:AJ224957; contains
4 WD-40 repeats (PF00400)
Length = 392
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Frame = +1
Query: 1 SDWVSCVRFSPNHA-NP-IIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGS 174
SD V+ + FS + A +P ++ SC D T++ W T +++ + + S G+
Sbjct: 83 SDTVNQIAFSSDSAASPHVLHSCSSDGTIRSWD-TRSFQQVSRIDTGNDQEIFSFSYGGA 141
Query: 175 L--CASGGKDMKAMLWDLNDGKHLHTLDQ 255
+GG + +LWD + K + L++
Sbjct: 142 ADNLLAGGCKEQVLLWDWRNSKQVACLEE 170
>At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2
WD-40 repeats (PF0400);similar to guanine
nucleotide-binding protein beta subunit GPBA (SP:P36408)
[Dictyostelium discoideum (Slime mold)]; similar to
katanin p80 (WD40-containing) subunit B 1 (GI:12655011)
[Homo sapiens]
Length = 418
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 142 LNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTL 249
+N +VSPDG L A G + ++ D + GK + +L
Sbjct: 251 VNNTSVSPDGKLLAVVGDSTECLISDSHSGKVISSL 286
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 127 GHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLND 228
GH Y P+G + A+G +D LWD+ +
Sbjct: 288 GHKDYSFASAWHPNGLILATGNQDTACRLWDIRN 321
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTV 153
V+ + FS + +++CG D+T+KVW + GH + +V
Sbjct: 465 VNDISFSTPNKQLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSV 512
Score = 27.9 bits (59), Expect = 7.8
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = +1
Query: 25 FSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMK 204
F P N I + D T++++++ ++K GHS + + S ++ S G D +
Sbjct: 884 FHPQDNNIIAIGMD-DSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ 942
Query: 205 AMLWDLNDG--KHLHTLDQMISSRPCASHPTDT 297
+W+ DG K + + RP S P+DT
Sbjct: 943 LCVWN-TDGWEKQRSKVLPLPQGRP-NSAPSDT 973
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTV 153
V+ + FS + +++CG D+T+KVW + GH + +V
Sbjct: 465 VNDISFSTPNKQLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSV 512
Score = 27.9 bits (59), Expect = 7.8
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = +1
Query: 25 FSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMK 204
F P N I + D T++++++ ++K GHS + + S ++ S G D +
Sbjct: 884 FHPQDNNIIAIGMD-DSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ 942
Query: 205 AMLWDLNDG--KHLHTLDQMISSRPCASHPTDT 297
+W+ DG K + + RP S P+DT
Sbjct: 943 LCVWN-TDGWEKQRSKVLPLPQGRP-NSAPSDT 973
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 160 SPDGSLCASGGKDMKAMLWDLNDGKHLHTLD 252
SPD + SG D ++WD+N G LD
Sbjct: 62 SPDDAYLISGSVDNSCIIWDVNKGSVHQILD 92
>At5g59200.1 68418.m07419 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 590
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 247 LDQMISSRPCASHPTDTG-YVLLSDLPSRSGIWKARRWLKSS 369
L + I+ R S D+G YVLLS+L + SG WK ++ S
Sbjct: 488 LGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRES 529
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 37 HANPIIVSCGWDRT-VKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAML 213
+ N ++ + G+ + + VW GHS + + VSPDG +G D
Sbjct: 389 NVNELVSTHGYSQNQIIVWKYPTMSKLATLTGHSYRVLYLAVSPDGQTIVTGAGDETLRF 448
Query: 214 WDL 222
W++
Sbjct: 449 WNV 451
>At3g26480.1 68416.m03301 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (5 copies, 2 below cutoff); related to
LACK protective antigen (GI:13625467) [Leishmania
donovani]
Length = 764
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 130 HSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGK 234
HS + + S DG+L SG K ++W+L GK
Sbjct: 245 HSAEVTVLNFSSDGALLYSGVKAGDFVVWELGTGK 279
>At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKL 111
V+ + F+ + +V+CG D+ +KVW L+ KL
Sbjct: 456 VNDLAFAHPNKQMCVVTCGDDKLIKVWDLSGKKL 489
>At1g78070.2 68414.m09098 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 447
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 127 GHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLND 228
GH Y + P+G + A+G +D LWD+ +
Sbjct: 317 GHLDYSFSSAWHPNGQILATGNQDTTCRLWDVRN 350
>At5g59120.1 68418.m07409 subtilase family protein contains
similarity to prepro-cucumisin GI:807698 from [Cucumis
melo]; non-consensus AA acceptor site at exon 6
Length = 732
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 20 SDSHPIMPTPLSYPVVGTELSRSGISLTVS 109
S++ I+P L+YP + +LS SG + TV+
Sbjct: 617 SEAKKILPRNLNYPSMSAKLSGSGTTFTVT 646
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +1
Query: 76 TVKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQ 255
TV+V + K H+ + + P G A G D LWD++D L T +
Sbjct: 172 TVEVLSYPSLKPLDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDISDMLCLRTFTK 231
Query: 256 M 258
+
Sbjct: 232 L 232
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 127 GHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLD 252
GH +++V + +G+ ASG D A +W++ H D
Sbjct: 18 GHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKD 59
>At5g14050.1 68418.m01644 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to unknown protein (ref|NP_057085.1)
Length = 546
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 97 TNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLH 243
T K I L +G + ++ S DG S G D + +WDL K L+
Sbjct: 362 TKTKELIGTLKMNGSVRSLAFSEDGKHLLSSGGDGQVYVWDLRTMKCLY 410
>At5g13850.1 68418.m01619 nascent polypeptide-associated complex
(NAC) domain-containing protein similar to alpha-NAC,
non-muscle form [Mus musculus] GI:1666690; contains Pfam
profile PF01849: NAC domain
Length = 159
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 221 RSHNIAFMSLPPDAHKEPSGDTVTVF 144
+S NI F+ PD K P+ DT +F
Sbjct: 84 KSKNILFVISKPDVFKSPASDTYVIF 109
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHLTNCKLK--INHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLN 225
+++ D TV +W + + G + ++ +PDG A G + + LWD
Sbjct: 153 VLAIALDHTVYLWDASTGSTSELVTIDEEKGPVTSINWAPDGRHVAVGLNNSEVQLWDSA 212
Query: 226 DGKHLHTL 249
+ L TL
Sbjct: 213 SNRQLRTL 220
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +1
Query: 52 IVSCGWDRTVKVWHLTNCKLK--INHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLN 225
+++ D TV +W + + G + ++ +PDG A G + + LWD
Sbjct: 143 VLAIALDHTVYLWDASTGSTSELVTIDEEKGPVTSINWAPDGRHVAVGLNNSEVQLWDSA 202
Query: 226 DGKHLHTL 249
+ L TL
Sbjct: 203 SNRQLRTL 210
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Frame = +1
Query: 37 HANPIIVSCGWDRT-VKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAML 213
+ N ++ + G+ + + VW GH+ + + VSPDG +G D
Sbjct: 432 NVNELVSTHGYSQNQIIVWKYPTMSKIATLTGHTYRVLYLAVSPDGQTIVTGAGDETLRF 491
Query: 214 WDLNDGKHLHTLDQMISS 267
W++ D I S
Sbjct: 492 WNVFPSPKSQNTDSEIGS 509
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 148 TVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMISSRPCASH 285
TVT + DGS ASG D + D+ H T+ +S+ SH
Sbjct: 278 TVTQNGDGSSTASGTADHSILNADITTQVHTLTVTSSSNSQQAVSH 323
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 148 TVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMISSRPCASH 285
TVT + DGS ASG D + D+ H T+ +S+ SH
Sbjct: 539 TVTQNGDGSSTASGTADHSILNADITTQVHTLTVTSSSNSQQAVSH 584
>At3g12390.1 68416.m01544 nascent polypeptide associated complex
alpha chain protein, putative / alpha-NAC, putative
similar to alpha-NAC, non-muscle form [Mus musculus]
GI:1666690; contains Pfam profiles PF01849: NAC domain,
PF00627: UBA/TS-N domain
Length = 203
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 221 RSHNIAFMSLPPDAHKEPSGDTVTVF 144
+S NI F+ PD K P+ DT +F
Sbjct: 88 KSKNILFVISKPDVFKSPASDTYVIF 113
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGH 132
V+ + FS + + +CG D+T+KVW + GH
Sbjct: 465 VNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGH 505
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNCKLKINHLGH 132
V+ + FS + + +CG D+T+KVW + GH
Sbjct: 465 VNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGH 505
>At1g69350.1 68414.m07958 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535: PPR repeat
Length = 787
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 292 DTGY-VLLSDLPSRSGIWKARRWLKSSGLKSLTKHKLPRQTLLSV 423
DTGY LLS++ + G W+ R L+S+ +KS K+P + + +
Sbjct: 705 DTGYYTLLSNIYAEEGEWEEFRRLRSA-MKSSNLKKVPGYSAIEI 748
>At1g48000.1 68414.m05346 myb family transcription factor similar to
myb-related transcription factor (cpm10) GB:U33915
GI:1002795 from [Craterostigma plantagineum]
Length = 243
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 628 IIQHCQELEQVEKSLRVNHPRNE*RTQK*MKLMLTIKLIG 509
+I H +E+E+VEK + + R ++ MKL+ I L G
Sbjct: 14 LINHKEEVEEVEKKMEIEIRRGPWTVEEDMKLVSYISLHG 53
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 37 HANPIIVSCGWDRT-VKVWHLTNCKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAML 213
+ N I+ + G+ + + +W + GHS + + SPDG +G D
Sbjct: 395 NVNEIVSTHGYSQNQIMLWKYPSMSKVATLTGHSMRVLYLATSPDGQTIVTGAGDETLRF 454
Query: 214 WDL 222
W++
Sbjct: 455 WNV 457
>At5g01290.1 68418.m00039 mRNA capping enzyme family protein similar
to mRNA capping enzyme [Xenopus laevis] GI:7239232;
contains Pfam profiles PF01331: mRNA capping enzyme
catalytic domain, PF03919: mRNA capping enzyme
C-terminal domain
Length = 607
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 31 PNHANPIIVSCGWDRTVKVW 90
P+ N IV C WD+ KVW
Sbjct: 527 PSSYNGKIVECAWDKDKKVW 546
>At1g78770.1 68414.m09180 cell division cycle family protein similar
to cell division cycle protein GI:603230 from [Homo
sapiens]; contains Pfam profile PF00515 TPR Domain
148977 (apparently not full-length).
Length = 543
Score = 27.9 bits (59), Expect = 7.8
Identities = 24/101 (23%), Positives = 43/101 (42%)
Frame = +3
Query: 255 NDIITALCFSPNRYWLCAAFGPSIKIWDLESKEMVEELRPEIINQTQTSKTDPPQCLSLA 434
+ ++++L FSP WL + + IK +D KE EL+ + + + ++LA
Sbjct: 182 SSLLSSLQFSPEDGWLSSFYSCLIKKYD---KESTVELKFKKLENETSGSVSGSSMITLA 238
Query: 435 WSTDGQTLFAGYSDNTKEFGRFPSHPISLIVNINFIYFCVL 557
+TD A Y E+ + +L+ F C L
Sbjct: 239 NNTDLLACKAEYYHQCCEYQKCFELTAALLEKDPFHLKCTL 279
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Frame = +1
Query: 10 VSCVRFSPNHANPIIVSCGWDRTVKVWHLTNC----KLKINHLGHSGYLNTVTVSPDGSL 177
V CV +S +A +++ WD+T+K W + +I +N++++ + +
Sbjct: 100 VRCVEYS--YAAGQVITGSWDKTIKCWDPRGASGTERTQIGTYMQPERVNSLSLVGNRLV 157
Query: 178 CASGGKDMKAM-LWDLNDGKHLHTLDQMISSRPCASHPTDTGYVLLS 315
A+ G+ + L +++ + +R +P TGY L S
Sbjct: 158 VATAGRHVNIYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS 204
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +1
Query: 142 LNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDQMISSRPCASHPTDTGYVLLS 315
+N + P ASGG D +WD N+ K L+ + +S S D G + ++
Sbjct: 243 VNAIAFHPIYGTFASGGCDGFVNIWDGNNKKRLYQYSKYPTSIAALSFSRDGGLLAVA 300
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,114,377
Number of Sequences: 28952
Number of extensions: 369980
Number of successful extensions: 1600
Number of sequences better than 10.0: 173
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1566
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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